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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatgcaactatgattctacgaatatagtcactctagactatgggtgcatgcagtgccttctaggaagacactgctggcatatgaacacttaatttatacttatttcatgcagGTTTGTCTTAACATTTGCTCTGGGGGCTGGTCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGT

Basic information

species Glycine max
transcript GLYMA09G32510.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G32510.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv11s0016g03660.t01 (Vitis vinifera), 3'ss of exon 12
gtgagtatgcaactatgattctacgaatatagtcactctagactatgggt-gcatgcagtgccttctaggaagacactgctggcatatg-aacacttaatttatacttatttcatgcagGTTTGTCTTAACATTTGCTCTGGGGGCTGGTCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGT
                  |  || ||| ||  |  ||       | |  |   |   ||     | |   |  |    | ||| ||||  ||    ||||||     |  ||  ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| || || |  |||||||| || ||||| ||||||||||||
------------------tgatatgaa-atgctggctaatagtgaagaatcatacttagacatgtttgaaataatgaggttggaatatataatctctaattttagactcctttgtgcagGTTTGTCTTAACATTTGCTCTGGGGGCTGGCCCAGTTCCAGGTCTTCTCCTACCAGAAATTTTCCCAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286822|gb|BI470713.1|BI470713
EST:     CTTGTATCAAACGTGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTACT                         GTTTGTCTTAACATTTGCTCTGGGGGCTGGTCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACGTGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTACTgtgagtatgc ... tttcatgcagGTTTGTCTTAACATTTGCTCTGGGGGCTGGTCCAGTTCCAGGTCTCCTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaggaagacactgctggcatatgaacacttaatttatacttatttcatgcagGTTTGTCTTAACATTTGCTCTGGGGGCTGGTCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGT
                             acttaat  putative branch site (score: 4)
                                         cttatttc  putative PPT
                     atatgaacacttaatt  TA-rich tract