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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggaatacttctacttttcaaatgttaagatgatatttttttctagtgtgccttggattataactaattgaactttttcctacagGGAATTGGAGAGAAGAGAGCTACCTTCATACTTGAACTCCGAGAAGAATCTCCAGAACCTTTCAAGAGT

Basic information

species Glycine max
transcript GLYMA09G25160.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020188|gb|CX706930.1|CX706930
EST:     CAAGGAGGAATTNNNNNNNTTGAAG                         GGAATTGGAGAGAAGAGAGCTACCTTCATACTTGAACTCCGAGAAGAATCT
genomic: CAAGGAGGAATTAAAAAAATTGAAGgtcaggaata ... tttcctacagGGAATTGGAGAGAAGAGAGCTACCTTCATACTTGAACTCCGAGAAGAATCT
EST: gi|58023814|gb|CX710555.1|CX710555
EST:     CAAGGAGGAATTNNNNNNNTTGAAG                         GGAATTGGAGAGAAGAGAGCTACCTTCATACTTGAACTCCGAGAAGAATCT
genomic: CAAGGAGGAATTAAAAAAATTGAAGgtcaggaata ... tttcctacagGGAATTGGAGAGAAGAGAGCTACCTTCATACTTGAACTCCGAGAAGAATCT
EST: gi|21594281|gb|BQ610112.1|BQ610112
EST:     CAAGGAGGAATTNNNNNNNTTGAAG                         GGAATTGGAGAGAAGAGAGCTACCTTCATACTTGAACTCCGAGAAGAATCT
genomic: CAAGGAGGAATTAAAAAAATTGAAGgtcaggaata ... tttcctacagGGAATTGGAGAGAAGAGAGCTACCTTCATACTTGAACTCCGAGAAGAATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatttttttctagtgtgccttggattataactaattgaactttttcctacagGGAATTGGAGAGAAGAGAGCTACCTTCATACTTGAACTCCGAGAAGAATCTCCAGAACCTTTCAAGAGT
                               aactaat  putative branch site (score: 2)
                                          ctttttcctac  putative PPT
                          attataactaattgaa  TA-rich tract