Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttcatctgcatctatggtttggtacaaatctctgtttcacttggtgatactgatatcttatgctttgatcaatgatcagCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAG

Basic information

species Glycine max
transcript GLYMA08G45270.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45270.1 (Glycine max), 3'ss of exon 12
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 3'ss of exon 12
gttagttcatctgcatctatggtttggtacaaat-ctctgtttcacttggtgatactgatatcttatgctttgatcaatgatcagCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAG
  ||    |    |  ||||  ||   | ||  |  |||||||||         |||| |     |||  |  |||| ||  |||||  | ||||| || |||||||||||||||||||| ||||||||  || ||||||| ||||| || || ||||
-gtaaacgagtcactcctat--ttcattccaggtgttctgtttcatc-------actgttg----atgtctgtatcactgtgcagCTTGTTTATGAGAAATTGCCAAATGATATCTCAGAGAGGCATGTCCTATTGTTGGATCCTATTCTCGGGACAG

upper sequence: GLYMA08G45270.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 12
-----------------------------------------gttagttcatctgcatctatggtttggtacaaatctctgtttcacttggtgat-actgatatcttatgctttgatcaatgatcagCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAG
                                            ||     || ||   |||  |  | ||| || ||| | |       |  | |||| | | ||||| ||  || | ||  |||||||| ||||||||  | ||||| ||||||||||| |||||||||||||| ||||| ||| | || |||||||
gttggacagatctctctctctctgtatccttgtctcccatgcacagacacactacacacatgcat--gcacagatatctatctactaacattttgactgtttttttatgtttcaatgactggacagCTAATCTATGAAAAACTTCCAAAAGATATCTCAGACAGGCATGTGTTACTCTTGGATCCTGTCCTAGGCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31311442|gb|CD396645.1|CD396645
EST:     TAAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAG                         CTAATATATGAAAAGTTGCCNAATGATATCTCAGATAGGCATGTGTTACTG
genomic: TAAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGgttagttcat ... caatgatcagCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTG
EST: gi|13240468|gb|BG359777.1|BG359777
EST:     TAAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAG                         CTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTG
genomic: TAAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGgttagttcat ... caatgatcagCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatctctgtttcacttggtgatactgatatcttatgctttgatcaatgatcagCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAG
                            atatcttat  TA-rich tract