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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgcctaaatggactaatatggccattctagttttcaaattctgctcttaccaccataaaagatttattcaaagactgagctagctatctgattacagGAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTTAGGTCTGGTCAGAATGATCAGCATGTGAGTAATGACACTCAACAGAGTG

Basic information

species Glycine max
transcript GLYMA08G34280.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10252377|gb|BE820143.1|BE820143
EST:     AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAG                         GAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTT
genomic: AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgatttttg ... ctgattacagGAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTT
EST: gi|16344775|gb|BI970370.1|BI970370
EST:     AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAG                         GAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTT
genomic: AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgatttttg ... ctgattacagGAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTT
EST: gi|21676139|gb|BQ628490.1|BQ628490
EST:     AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAG                         GAGAGACTTGGGGACATACCTGGTGTCGCGACGCC
genomic: AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgatttttg ... ctgattacagGAGAGACTTGGGGACATACCTGGTGTCGCGACGCC
EST: gi|51335529|gb|CO979395.1|CO979395
EST:     AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAG                         GAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTT
genomic: AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgatttttg ... ctgattacagGAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcttaccaccataaaagatttattcaaagactgagctagctatctgattacagGAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTTAGGTCTGGTCAGAATGATCAGCATGTGAGTAATGACACTCAACAGAGTG
            ataaaagatttattca  TA-rich tract