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gtaatttagggcgtgtttaagctttagaaaaagtgctttcatggtatagctttgcatgtttctgttattattaatttttttaattgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGATACCCCAAAAAAGCCTAAATCATAACTCCTCGATCTACTAATGTTAAGCT
species | Glycine max |
transcript | GLYMA08G24660.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAG GTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGATEST: gi|298174867|gb|HO014784.1|HO014784
genomic: TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
EST: TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAG GTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGATEST: gi|192296695|gb|FG991263.1|FG991263
genomic: TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
EST: TTGAGAAG-ATCTTCCTGGGGGCTTGGCACCTATGCTTGGTGATCGAAAG GTAGAGCATTTTCTGGEST: gi|16348613|gb|BI974208.1|BI974208
genomic: TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGG
EST: TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAG GTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
genomic: TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
ttcatggtatagctttgcatgtttctgttattattaatttttttaattgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGATACCCCAAAAAAGCCTAAATCATAACTCCTCGATCTACTAATGTTAAGCT
atgtttctgttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttagggcgtgtttaagctttagaaaaagtgctttcatggtatagctttgcatgtttctgttattattaatttttttaattgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGATACCCCAAAAAAGCCTAAATCATAACTCCTCGATCTACTAATGTTAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC