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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttattagtttatttgtgccatgtaatttgaaaattgtgtgatctcaaacttatttttgaatattaagGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAGTCCCTCTTTTACCTTTGGCGTCTAACTGGCAACAAAACATACCAAGAAT

Basic information

species Glycine max
transcript GLYMA08G23730.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23730.1 (Glycine max), 3'ss of exon 12
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 3'ss of exon 12
gttagttattagtttatttgtgccatgtaatttgaaaattgtgtgatc---tcaaacttatttttgaata-----ttaagGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAGTCCCTCTTTTACCTTTGGCGTCTAACTGGCAACAAAACATACCAAGAAT
||| || | || ||| |  |   |   |  | ||  | |||  || |    ||  |   ||      ||      || ||||||||||||| || ||||| ||||||||  | || ||||| || ||||| || || |||||||| |||||  ||||||| ||||| ||||| ||||| |
gttggtaaatactttttgcgcatctgtttgtatgttagttggttggttatgtcgtatccataagcacatgattgtttcagGACATGAGTGTTGGCACATCTTGGAACATTTTAAGACCAGAAACCGTTGAATCACTGTTTTACCTCTGGCGATTAACTGGGAACAAGACATATCAAGAGT

upper sequence: GLYMA08G23730.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 3'ss of exon 12
------gttagttattagtttatttgtgccatgtaatttgaaaattgtgtgatctcaaacttatttttgaatatta-agGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAGTCCCTCTTTTACCTTTGGCGTCTAACTGGCAACAAAACATACCAAGAAT
       ||  |  ||  ||| | | | | |  || ||     | ||    |||| |     || |   |   ||| |||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| || || |||||||| |||||| ||||||||||||| ||||||||||| |
gttagtttttctcttttctttttatatactagttatttcttttactgcccaatcttacttccatctaaaacatttacagGATATGAGTGTGGGTACATCATGGAACATATTGAGGCCCGAGACGGTTGAATCACTGTTTTACCTCTGGCGTTTAACTGGCAACAAGACATACCAAGAGT

upper sequence: GLYMA08G23730.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv09s0054g00230.t01 (Vitis vinifera), 3'ss of exon 7
------gttagttattagtttatttgtgccatgtaatttgaaaattgtgtgatctcaaacttatttttgaatatta-agGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAGTCCCTCTTTTACCTTTGGCGTCTAACTGGCAACAAAACATACCAAGAAT
       ||  |  ||  ||| | | | | |  || ||     | ||    ||||||     || |   |   ||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||| || || |||||||| |||||| ||||||||| ||| ||||||||||| |
gttagtttttctcttttctttttatatactagttatttcttttactgctcaatctcatttccatctaaaacatttacagGATATGAGTGTGGGTACATCATGGAACATATTGAGGCCCGAGACAGTTGAATCACTGTTTTACCTCTGGCGTTTAACTGGCAGCAAGACATACCAAGAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494883|gb|EH223050.1|EH223050
EST:     CAACTCCAACAAAATTGGCTGGAGAGAACTATTTCTTTCATTCTGGGCAG                         GACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG
genomic: CAACTCCAACAAAATTGGCTGGAGAGAACTATTTCTTTCATTCTGGGCAGgttagttatt ... gaatattaagGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG
EST: gi|192311621|gb|FK003104.1|FK003104
EST:     CAACTCCAACAAAATTGGCTGGAGAGAACTATTTCTTTCATTCTGGGCAG                         GACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG
genomic: CAACTCCAACAAAATTGGCTGGAGAGAACTATTTCTTTCATTCTGGGCAGgttagttatt ... gaatattaagGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG
EST: gi|27445891|gb|CA953014.1|CA953014
EST:     CAACTCCAACAAAATTGGCTGGAGAGAACTATTTCTTTCATTCTGGGCAG                         GACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG
genomic: CAACTCCAACAAAATTGGCTGGAGAGAACTATTTCTTTCATTCTGGGCAGgttagttatt ... gaatattaagGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG
EST: gi|192311620|gb|FK003103.1|FK003103
EST:     CAACTCCAACAAAATTGGCTGGAGAGAACTATTTCTTTCATTCTGGGCAG                         GACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG
genomic: CAACTCCAACAAAATTGGCTGGAGAGAACTATTTCTTTCATTCTGGGCAGgttagttatt ... gaatattaagGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgccatgtaatttgaaaattgtgtgatctcaaacttatttttgaatattaagGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAGTCCCTCTTTTACCTTTGGCGTCTAACTGGCAACAAAACATACCAAGAAT
                               tcaaacttatttttga  TA-rich tract