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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtgacctataaggctataactctaatctttttactcttcatttcttttacaatcctggttataacattatttatatatttgctcattttgtttctccacgctgaatgcttattccttttcatgccagTGTTGTGATCAATTCCAATGAAGGATTTTTGAGGAATGGAAAGAATCCTGTTCTTACAGTTTTGTCTGCTGGGCATGCTTTGCATGTTTTTATCAACAAT

Basic information

species Glycine max
transcript GLYMA08G20650.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193303984|gb|FK270797.1|FK270797
EST:     CAGATAAATGCAACCAGAGATTTATCTGATTACTTGTGGTACTCCACAGA                         TGTTGTGATCAATTCCAATGAAGGATTTTTGAGGAATGGAAAGAATCCTGT
genomic: CAGATAAATGCAACCAGAGATTTATCTGATTACTTGTGGTACTCCACAGAgtgagtgtga ... ttcatgccagTGTTGTGATCAATTCCAATGAAGGATTTTTGAGGAATGGAAAGAATCCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatttgctcattttgtttctccacgctgaatgcttattccttttcatgccagTGTTGTGATCAATTCCAATGAAGGATTTTTGAGGAATGGAAAGAATCCTGTTCTTACAGTTTTGTCTGCTGGGCATGCTTTGCATGTTTTTATCAACAAT
                                 tgcttattccttttc  CT-rich tract
            attttgttt  TA-rich tract