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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcttaaatttctttcatattgaacattatatgtctattgtttcgtaaacagcattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtagATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAAGGATTGGTTTGGGTCTTGTTCCTGCATTTTGTGCACTAGTTGGGGTGGT

Basic information

species Glycine max
transcript GLYMA08G16870.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337979|gb|CO981845.1|CO981845
EST:     GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAA                         --CTC-C-----AG-----G-CAACAACCCAATTCCCCTTTTCAGTTACAA
genomic: GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttct ... atcaatgtagATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAA
EST: gi|6200824|gb|AW152924.1|AW152924
EST:     GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAA                         ATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAA
genomic: GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttct ... atcaatgtagATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAA
EST: gi|27427316|gb|CA938836.1|CA938836
EST:     GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAA                         ATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTT
genomic: GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttct ... atcaatgtagATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTT
EST: gi|18038731|gb|BM307025.1|BM307025
EST:     GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAA                         ATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAA
genomic: GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttct ... atcaatgtagATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtagATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAAGGATTGGTTTGGGTCTTGTTCCTGCATTTTGTGCACTAGTTGGGGTGGT
         atatcatttttctaat  TA-rich tract