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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcatttcattgccaatgatgacatgtactatgatcaggatgagttgtatgtgtgccctgtaattaccactggcccctgttattgttaatgatgacacatactatgatcatgatgagttgtatatttctcttttaattaccagcaaccccagtttctaatttttttttgttaaattttctttgcagTGATCATGAAGGTGGCAATGTTAGTTCACACACAGCACACCTA

Basic information

species Glycine max
transcript GLYMA08G16770.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691294|gb|AW759487.1|AW759487
EST:     GATGATCCGGAAATGCTGGAGTTTATGAGGCTGTATATTTCCATCCACAG                         TGATCATGAAGGTGGCAACGTTAGTTCACACACAGCACACCTA
genomic: GATGATCCGGAAATGCTGGAGTTTATGAGGCTGTATATTTCCATCCACAGgtttgcattt ... ttctttgcagTGATCATGAAGGTGGCAATGTTAGTTCACACACAGCACACCTA
EST: gi|23057280|gb|BU577954.1|BU577954
EST:     GTTTATGAGGCTGTATATTTCCATCCACAG                         TGATCATGAAGGTGGCAATGTTAGTTCACACACAGCACACCTA
genomic: GTTTATGAGGCTGTATATTTCCATCCACAGgtttgcattt ... ttctttgcagTGATCATGAAGGTGGCAATGTTAGTTCACACACAGCACACCTA
EST: gi|21994889|gb|BQ786417.1|BQ786417
EST:     GATGATCCGGAAATGCTGGAGTTTATGAGGCTGTATATTTCCATCCACAG                         TGATCATGAAGGTGGCAATGTTAGTTCACACACAGCACACCTA
genomic: GATGATCCGGAAATGCTGGAGTTTATGAGGCTGTATATTTCCATCCACAGgtttgcattt ... ttctttgcagTGATCATGAAGGTGGCAATGTTAGTTCACACACAGCACACCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaattaccagcaaccccagtttctaatttttttttgttaaattttctttgcagTGATCATGAAGGTGGCAATGTTAGTTCACACACAGCACACCTA
                      ttctaat  putative branch site (score: 2)
                                           ttttctttgc  putative PPT
                   agtttctaattttttt  TA-rich tract