Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgatttctagttattattgaactacacactatactagatgttctttacgtgtttcaatatgtattgacattatcattatatgactgataattgtagGTTACTGCAATGGTGACAACAAACCTCAATAAAATAATTGATGTTAATTACTACCCAGTTGATACTGCATTTGTGGAACTGCTTTTTGATCTACAATTTA

Basic information

species Glycine max
transcript GLYMA08G15360.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 3'ss of exon 10
gtacgatttctagttattattgaactacacactatactagatgttctttacgtgtttcaatatgtattgacattatcattatatgactgataattgtagGTTACTGCAATGGTGACAACAAACCTCAATAAAATAATTGATGTTAATTACTACCCAGTTGATACTGCATTTGTGGAACTGCTTTTTGATCTACAATTTA----
            |||  | || || ||   ||| ||||  |||    || |      || || |  |  |   ||  | ||| ||  || | |||| || ||||| |||| || ||||  || ||||||||||||||||||  |||||| ||||| ||||| ||||||      ||  |    | |||   |||    |    
------------gtttgtgtttaa-tatttact-tactttatgcctcttcc-----ccacta-gcctgaatgctactaatatttg-ttggttattgcagATTACTTCAATTGTCACAAGGAATCTCAATAAAATAATTGATACTAATTATTACCCTGTTGAGACTGCAA----AGAGATCAAATATGAGGCACAGGCCAATCG

upper sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 10
gtacgatttctagttattattgaac-tacaca-ctatactagatgttctttacgtgtt-tcaatatgtattgacattatcat-----------tatatgactgataattgtagGTTACTGCAATGGTGACAACAAACCTCAATAAAATAATTGATGTTAATTACTACCCAGTTGATACTGCATTTGTGGAACTGCTTTTTGATCTACAATTTA
||  ||| | |  |||   | | || ||     ||    | | |  |   |  ||||| | |  || ||   | || | |||           | | |      |  ||  ||||||||||||| || ||| |||| || || ||||||||||||||||| |||||||| || || ||||||     |  |    |   | ||  ||   || 
gtctgatatttt-ttaccttagcacatatgtttctgcttttgtttgttcatttgtgttattagcatataaaaaaatcagcatgtaactcttttttttttttcttttgttacagGTTACTGCAATAGTTACATCAAATCTGAACAAAATAATTGATGTTAACTACTACCCGGTAGAGACTGCAAAAAGGTCAAACTTGCGTCATAGACCCATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttacgtgtttcaatatgtattgacattatcattatatgactgataattgtagGTTACTGCAATGGTGACAACAAACCTCAATAAAATAATTGATGTTAATTACTACCCAGTTGATACTGCATTTGTGGAACTGCTTTTTGATCTACAATTTA
                         acattatcattatat  TA-rich tract