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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgttaactatttattttattccttttgctgttctttatttttctttgtttccttcctttaagcttgaaagatagcaatcctagactaatacatggaatgcattttatatttttctgttcagctccttctattgattcttttacctattatttttcagTGTATACATTTGCTTGAGGAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGC

Basic information

species Glycine max
transcript GLYMA08G08730.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208208446|gb|GE004335.1|GE004335
EST:     AAGGTCTCATACAACAAGCTCCACCCCTACACCTCATGGATTCCAATTAC                         TGTATACATTTGCTTGAGGAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCATGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGGAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: gi|14516286|gb|BI094958.1|BI094958
EST:     AAGGTCTCATTCAACAAGCTCCACCCCTACACCTCATGGATTCCAATTAC                         TGTATACATTTGCTTGAGGAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCATGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGGAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatatttttctgttcagctccttctattgattcttttacctattatttttcagTGTATACATTTGCTTGAGGAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGC
                          tattgat  putative branch site (score: 3)
 ttcttttacctattat  CT-rich tract
 attcttttacctatta  TA-rich tract