1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gatagtattaaaatctttacaatgcacagtctatcaaaattaagctctaagttttgcttcacactactgattgaaattgaatttcaatctttttctgtagGTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGAGAACAATCAAGAGGAAGATGGAGCTTGGAAAATTTACATGATGTGGTCA
species | Glycine max |
transcript | GLYMA08G07840.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACATACTCCATTTTTACATTTCCTGACCAATATTTGTGCAATTATTGGAG GTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGAEST: gi|209704675|gb|BW675883.1|BW675883
genomic: ACATACTCCATTTTTACATTTCCTGACCAATATTTGTGCAATTATTGGAGgtaattcctt ... ttttctgtagGTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGA
EST: ACATACTCCATTTTTACATTTCCTGACCAATATTTGTGCAATTATTGGAG GTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGAEST: gi|58019656|gb|CX706398.1|CX706398
genomic: ACATACTCCATTTTTACATTTCCTGACCAATATTTGTGCAATTATTGGAGgtaattcctt ... ttttctgtagGTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGA
EST: ACATACTCCATTTTTACATTTCCTGACCAATATTTGTGCAATTATTGGAG GTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGAEST: gi|58019280|gb|CX706022.1|CX706022
genomic: ACATACTCCATTTTTACATTTCCTGACCAATATTTGTGCAATTATTGGAGgtaattcctt ... ttttctgtagGTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGA
EST: ACATACTCCATTTTTACATTTCCTGACCAATATTTGTGCAATTATTGGAG GTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGA
genomic: ACATACTCCATTTTTACATTTCCTGACCAATATTTGTGCAATTATTGGAGgtaattcctt ... ttttctgtagGTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGA
tctaagttttgcttcacactactgattgaaattgaatttcaatctttttctgtagGTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGAGAACAATCAAGAGGAAGATGGAGCTTGGAAAATTTACATGATGTGGTCA
tactgat putative branch site (score: 2)
tttcaatctttttct putative PPT
aaattgaatttcaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatagtattaaaatctttacaatgcacagtctatcaaaattaagctctaagttttgcttcacactactgattgaaattgaatttcaatctttttctgtagGTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGAGAACAATCAAGAGGAAGATGGAGCTTGGAAAATTTACATGATGTGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - aatgcac
- - - - - - - - - - - - - - - - - -aaaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actactg