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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattgcttaatccatacttgccattttccctttccaataatcatttagaagttttttcatgtttgaaaactgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGATTATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATACAACCACGGTT

Basic information

species Glycine max
transcript GLYMA08G06860.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06860.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv03s0088g01260.t01 (Vitis vinifera), 3'ss of exon 12
---------gtgattgcttaatccatacttgccattttccctttccaataatcatttagaagttttttcat---------gtttgaa-aactgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGATTATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATACAACCACGGTT
         ||  |     |||  ||  | | || ||    ||    ||  |  |||  ||  | || | |         ||| | |    || ||||||||||||||| ||| | ||||| |||||  | || |||| |  ||| ||||  ||||||| || ||| |||||||||||| |||| ||||||||||| || |
gaagtatatgtagtacaaaaatggatggt-gtcaattaattttcttgattcttgtttcaaatatcttccttacaaccactgttagcatggttgcaatgcagATAGCTCGGAATATCACCACTAATGAGTTGGCGAATTTCATCCGCTATGGGTATCTTCATGCTCCAGATGGGCGGTTCCGAAATCCATACAACCATGGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22929134|gb|BU546273.1|BU546273
EST:     CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATG                         ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
genomic: CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGgtgattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
EST: gi|207734220|gb|GD711064.1|GD711064
EST:     CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATG                         ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
genomic: CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGgtgattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
EST: gi|254334807|gb|GR844592.1|GR844592
EST:     CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATG                         ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
genomic: CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGgtgattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
EST: gi|208256522|gb|GE053263.1|GE053263
EST:     CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATG                         ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
genomic: CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGgtgattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
EST: gi|207692333|gb|GD674474.1|GD674474
EST:     CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATG                         ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
genomic: CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGgtgattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccctttccaataatcatttagaagttttttcatgtttgaaaactgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGATTATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATACAACCACGGTT
          aataatcatttagaag  TA-rich tract