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...tatgattatgaatgtaatactatgaagctaagggtgtgaaatatcaaacaagcttgctattaagttggtaaaaagttagaaactgacttcttttgaacagGTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTCCGCTCTCATTTTTCTCAATCTATCAACTGGTCTGGTATTCGGTACTATT
species | Glycine max |
transcript | GLYMA08G03760.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTT GTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTCEST: gi|7234746|gb|AW570080.1|AW570080
genomic: TGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTTgtaagtattt ... ttttgaacagGTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTC
EST: TGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTT GTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTCEST: gi|22933867|gb|BU551006.1|BU551006
genomic: TGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTTgtaagtattt ... ttttgaacagGTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTC
EST: TCTCTCGCTTCNTATAATTGGTGTCTT GTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCNGCATTC
genomic: TCTCTCGCTTCTTATAATTGGTGTCTTgtaagtattt ... ttttgaacagGTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTC
aaacaagcttgctattaagttggtaaaaagttagaaactgacttcttttgaacagGTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTCCGCTCTCATTTTTCTCAATCTATCAACTGGTCTGGTATTCGGTACTATT
aactgac putative branch site (score: 2)
cttctttt CT-rich tract
taaaaagttagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgattatgaatgtaatactatgaagctaagggtgtgaaatatcaaacaagcttgctattaagttggtaaaaagttagaaactgacttcttttgaacagGTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTCCGCTCTCATTTTTCTCAATCTATCAACTGGTCTGGTATTCGGTACTATT
- - - - -gaatgta
- - - - - - - - - - tatgaag
- - - - - - - - - - - - - - - -gggtgtg
- - - - - - - - - - - - - - - - - - - - - -tcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - -gcttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgactt