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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcgttggcctgcttgatattgtcggttctgcttctgcaggatagatatgatttatttgttaagaatgtagtggatttaaacttttcaattcaaagttagttttcaagtttatgattgggtgaacgaagttgtaattttgagtaggaaattatagaatttagaagcattatgttggttgctttgttatgcagAGAATCACTGAGGGACAGAATAAAGTGATAATTACTGATAGAATGTGGGCTAGGCTTCTGTCTTCAACAAATCAGCCCAGCTTTACCATTGCTAAGACTG

Basic information

species Glycine max
transcript GLYMA08G03570.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03570.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 12
gtgagttcgttggcctgcttgatattgtcggttctgcttctgcaggatagatatgatttatttgttaagaatgtagtggatttaaacttttcaattcaaagttagttttcaagtttatgattgggtga-acgaagttgtaattttgagtaggaaattatagaatttagaagcatta--tgttggttgctttgttatgcagAGAATCACTGAGGGACAGAATAAAGTGATAATTACTGATAGAATGTGGGCTAGGCTTCTGTCTTCAACAAATCAGCCCAGCTTTACCATTGCTAAGACTG
                                                                                                ||     |      || |     ||  | |   || |  || ||    | |   ||||| ||     | ||   || |||  |||||| || || ||  ||||| |||| | |||  ||||||| |||||  | || || ||||||||||||||||||||||||||||| || |||||||| ||||||   |   || |     
------------------------------------------------------------------------------------------------caggagaataaaagaaatgctatataagatagtacaacattctag---taatagggaaactaccacctctaactgctttacttgttggatggttggtc-tgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTAGGCTTCTGTCTTCTACCAATCAGCCAAGCTTTTTGAGCCCTGAAGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagtaggaaattatagaatttagaagcattatgttggttgctttgttatgcagAGAATCACTGAGGGACAGAATAAAGTGATAATTACTGATAGAATGTGGGCTAGGCTTCTGTCTTCAACAAATCAGCCCAGCTTTACCATTGCTAAGACTG
                                       ttgcttt  CT-rich tract
         aaattatagaatttag  TA-rich tract