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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttctggttgatttattctttccttttgagaagaaatcataaatatgtttctaattttagtctacaacgattgcagAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAG

Basic information

species Glycine max
transcript GLYMA08G01040.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01040.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G459746_T01 (Zea mays), 3'ss of exon 12
---------------gtaagtatttc-tggttgatttattctttccttttgagaagaaa----tcataaatatgtttctaattttagtctacaacgattgcagAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAG
               | |  ||  || |    ||      | ||   || |   |||      |  |    ||||| |||| |    || |   |  || ||||| |||||||||||||||||||| ||||| |||||||   || ||   || || ||||| ||  |||||
gtagtttgaaactttgaatttaactcataagcgaccggggccttgtattagttgagactacttttgtgttcatgttactaaatgagatcaatctccttttcagAATAAATGTAATGTTGGCTATGCTTTCATCAACATGACCAATGCTCAGCATATCATTCCATTTTATCAG

upper sequence: GLYMA08G01040.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 3'ss of exon 12
gtaagtatttctggttgatttattctttccttttgagaagaaatcataaat---------atgtttctaattttagtctacaacgatt-------gcagAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAG
|||||||  ||| |      |    |||| ||  |  |  |||||| | ||         |  | ||| |||    | |      |||       |||||||||||| ||||| |||||||| ||  | |||||||||||||||  ||| ||| |||| |||||||||
gtaagtaaatcttgcatggattgaatttctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcagAACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAG

upper sequence: GLYMA08G01040.1 (Glycine max), 3'ss of exon 12
lower sequence: EFJ29695 (Selaginella moellendorffii), 3'ss of exon 7
gtaagtatttctggttgatttattctttccttttgagaagaaatcataaatatgtttctaattttagtctacaacgat---tgcagAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAG
                           |  ||||   | |  | || || | | |  ||  | ||   |  |         ||||||| ||||| || ||||||||||||||||| |||||||  || || | ||| ||  | || ||  |  ||
--------------------------gtgatttt---aggcgagcaaaagtgtttccctggtattgaccggcttttgcctgtgcagAATAAATGCAACGTTGGCTATGCATTCATCAACATGACCGAGCCAGCTCACATCGTCCCCTTTTACAAG

upper sequence: GLYMA08G01040.1 (Glycine max), 3'ss of exon 12
lower sequence: EFJ28200 (Selaginella moellendorffii), 3'ss of exon 9
gtaagtatttctggttgatttattctttccttttgagaagaaatcataaatatgtttctaattttagtctacaacgat---tgcagAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAG
                           |  ||||   | |  | || || | | |  ||  | ||  ||  |         ||||||||||||| || ||||||||||||||||| |||||||  || || | ||| ||  | || ||  |  ||
--------------------------gtgatttt---aggcgagcaaaagtgtttccctggtattgatcggcttttgcctgtgcagAACAAATGCAACGTTGGCTATGCATTCATCAACATGACCGAGCCAGCTCACATCGTCCCCTTTTACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16106132|gb|BI893872.1|BI893872
EST:     AGCAATGTAAAGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAG                         AACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGNCAA
genomic: AGCAATGTAAAGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAGgtaagtattt ... acgattgcagAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttgagaagaaatcataaatatgtttctaattttagtctacaacgattgcagAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAG
                           ttctaat  putative branch site (score: 2)
         aagaaatcataaatat  TA-rich tract