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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaacttgtaaaattttatatggtagcaatggggatttgcatgatttttatgcacgaacgttctctgttgtcctcattcagcttctatttggtttattcagTACATACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTACTGCTATAGATATTCCACCTCCACGTGGCCCTCTCTG

Basic information

species Glycine max
transcript GLYMA07G39240.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015932|gb|CX702674.1|CX702674
EST:     TAGTGTCCTTTACTATTGGTGGAAGAACTTTTGAGCTTAGCCCAGAGGAG                         TACATACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTTGAGCTTAGCCCAGAGGAGgtatgattag ... gtttattcagTACATACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
EST: gi|9564737|gb|BE474246.1|BE474246
EST:     TAGTGTCCTTTACTATTGGTGGAAGAACTTTTGAGCTTAGCCCAGAGGAG                         TACATACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTTGAGCTTAGCCCAGAGGAGgtatgattag ... gtttattcagTACATACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
EST: gi|193521832|gb|FK481285.1|FK481285
EST:     TAGTGTCCTTTACTATTGGTGGAAGAACTTTTGAGCTTAGCCCAGAGGAG                         TACATACTCAAGGTGGGTGAAGGTCCTGT
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTTGAGCTTAGCCCAGAGGAGgtatgattag ... gtttattcagTACATACTCAAGGTGGGTGAAGGTCCTGT
EST: gi|57575750|gb|CX548725.1|CX548725
EST:     TAGTGTCCTTTACTATTGGTGGAAGAACTTTTGAGCTTAGCCCAGAGGAG                         TACATACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTTGAGCTTAGCCCAGAGGAGgtatgattag ... gtttattcagTACATACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgcacgaacgttctctgttgtcctcattcagcttctatttggtttattcagTACATACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTACTGCTATAGATATTCCACCTCCACGTGGCCCTCTCTG
                                              tttattc  CT-rich tract
                                    ttctattt  TA-rich tract