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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttatcatattattcttgacattcctaattaatcgttggagatttggagctaacaagttgtcaatgctgaattttatatccattgcagGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGATCTTGGCCTTTATGTATTTGCTTCCAAGCCATCAAGTGGTGCGGCTATCT

Basic information

species Glycine max
transcript GLYMA07G36610.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22931426|gb|BU548565.1|BU548565
EST:     TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAG                         GAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
genomic: TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGgtttgttatc ... tccattgcagGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
EST: gi|12774697|gb|BG239624.1|BG239624
EST:     TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAG                         GAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
genomic: TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGgtttgttatc ... tccattgcagGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
EST: gi|151408720|gb|EV278528.1|EV278528
EST:     TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAG                         GAACGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
genomic: TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGgtttgttatc ... tccattgcagGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
EST: gi|31467576|gb|CD409604.1|CD409604
EST:     TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAG                         GAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
genomic: TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGgtttgttatc ... tccattgcagGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
EST: gi|6746917|gb|AW317373.1|AW317373
EST:     TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAG                         GAATGTTTCTACCACTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
genomic: TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGgtttgttatc ... tccattgcagGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
EST: gi|15661572|gb|BI698943.1|BI698943
EST:     TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAG                         GAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
genomic: TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGgtttgttatc ... tccattgcagGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
EST: gi|213607524|gb|DB978447.1|DB978447
EST:     TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAG                         GAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
genomic: TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGgtttgttatc ... tccattgcagGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
EST: gi|13482134|gb|BG511477.1|BG511477
EST:     TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAG                         GAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT
genomic: TTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGgtttgttatc ... tccattgcagGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttggagatttggagctaacaagttgtcaatgctgaattttatatccattgcagGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGATCTTGGCCTTTATGTATTTGCTTCCAAGCCATCAAGTGGTGCGGCTATCT
              agctaac  putative branch site (score: 2)
                                    aattttatatccatt  TA-rich tract