1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gctattttattgctaaatgctgtcaaatttaaatttcttcactttgttttgaggctggtaattagttaactaattttatgatgtttctactttcttgtagTTGGCTTGGGAAGATTACACTGGAGACTTATATCTCCCAGATCCATATCTGGTTAAG
species | Glycine max |
transcript | GLYMA07G36550.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TATACACTGACTCTTTTTGC TTGGCTTGGGAAGATTACACTGGAGACTTATATCTCCCAGATCCATATCTGEST: gi|17519074|gb|BM188116.1|BM188116
genomic: TATACGCTGACTCTTTTTGCgtaagttgtc ... tttcttgtagTTGGCTTGGGAAGATTACACTGGAGACTTATATCTCCCAGATCCATATCTG
EST: TTGCGGAATGTTACACAAAGTTTTCGTAGCTATACGCTGACTCTTTTTGC TTGGCTTGGGAAGATTACACTGGAGACTTATATCTCCCAGATCCATATCTG
genomic: TTGCGGAATGTTACACAAAGTTTTCGTAGCTATACGCTGACTCTTTTTGCgtaagttgtc ... tttcttgtagTTGGCTTGGGAAGATTACACTGGAGACTTATATCTCCCAGATCCATATCTG
gttttgaggctggtaattagttaactaattttatgatgtttctactttcttgtagTTGGCTTGGGAAGATTACACTGGAGACTTATATCTCCCAGATCCATATCTGGTTAAG
aactaat putative branch site (score: 2)
tgtttctactttctt putative PPT
taattagttaactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctattttattgctaaatgctgtcaaatttaaatttcttcactttgttttgaggctggtaattagttaactaattttatgatgtttctactttcttgtagTTGGCTTGGGAAGATTACACTGGAGACTTATATCTCCCAGATCCATATCTGGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - gaggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtt