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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaggacgtgtttaagctttagaaaaagtgctttcgtggaatagctttgcatttttctgttaaaatcttttttttttaattgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGATACCCCAAAAAAGCCTAAATCATAATTCCTTGGTCTACTAATT

Basic information

species Glycine max
transcript GLYMA07G34600.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053462|gb|BM732129.1|BM732129
EST:     GAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAG                         GTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
genomic: GAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
EST: gi|26267806|gb|CA818869.1|CA818869
EST:     AAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAG                         GTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
genomic: AAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtggaatagctttgcatttttctgttaaaatcttttttttttaattgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGATACCCCAAAAAAGCCTAAATCATAATTCCTTGGTCTACTAATT
                                tcttttttttttaatt  CT-rich tract
 atttttctgttaaaat  TA-rich tract