1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtgggttatctttccttgtctaagctaatatgtgatagtagttatatgtggtgcataattgaacttggtgatgtagGTTCCTAATGCGACAAATAGTTTATGTGGATATAAAATTGTTACTGGCCAGCCATCTGATAGGCTTGGAGAGGACTTTTCAGAGCATTATAATGATTTTA
species | Glycine max |
transcript | GLYMA07G32480.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTACCTATGTTGAGTGCTTGTTGTACACATTTCATCACTTAGCTCATAAG GTTCCTAATGCGACAAATAGTTTATGTGGATATAAAATTGTTACTGGCCAGEST: gi|58016932|gb|CX703674.1|CX703674
genomic: TTACCTATGTTGAGTGCTTGTTGTACACATTTCATCACTTAGCTCATAAGgtgggttatc ... ggtgatgtagGTTCCTAATGCGACAAATAGTTTATGTGGATATAAAATTGTTACTGGCCAG
EST: TTACCTATGTTGAGTGCTTGTTGTACACATTTCATCACTTAGCTCATAAG GTTCCTAATGCGACAAATAGTTTATGTGGATATAAAATTGTTACTGGCCAGEST: gi|193673321|gb|FK614340.1|FK614340
genomic: TTACCTATGTTGAGTGCTTGTTGTACACATTTCATCACTTAGCTCATAAGgtgggttatc ... ggtgatgtagGTTCCTAATGCGACAAATAGTTTATGTGGATATAAAATTGTTACTGGCCAG
EST: TACCTATGTTGTAGTGCTTGTTGTACACATTTCATCACTTAGCTCATAAG GTTCCTAATGCGACAAATAGTTTATGTGGATACAAAATTGTTACTGGCCAG
genomic: TACCTATGTTG-AGTGCTTGTTGTACACATTTCATCACTTAGCTCATAAGgtgggttatc ... ggtgatgtagGTTCCTAATGCGACAAATAGTTTATGTGGATATAAAATTGTTACTGGCCAG
aagctaatatgtgatagtagttatatgtggtgcataattgaacttggtgatgtagGTTCCTAATGCGACAAATAGTTTATGTGGATATAAAATTGTTACTGGCCAGCCATCTGATAGGCTTGGAGAGGACTTTTCAGAGCATTATAATGATTTTA
agctaat putative branch site (score: 3)
tagttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttatctttccttgtctaagctaatatgtgatagtagttatatgtggtgcataattgaacttggtgatgtagGTTCCTAATGCGACAAATAGTTTATGTGGATATAAAATTGTTACTGGCCAGCCATCTGATAGGCTTGGAGAGGACTTTTCAGAGCATTATAATGATTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA