1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaattctgagaaaaccttatattttttctgtgctacttaaagtagtttcacaagttttgctggttttcattgataattttgtccatgtttaataatatagGTCGTGAAAACTGCCTCTCAATGTGGACTTTCTGTTGTGATTCAATGATGGAGACAGATTTGAAGAACGATGGCAGTTTCAATAATCAGTCTGAGAGTAG
species | Glycine max |
transcript | GLYMA07G30960.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCGAAGATTTGTAATTCCAGATGATGGCAATGAAGAATTTTGCTTGACTG GTCGTGAAAACTGCCTCTCAATGTGGACTTTCTGTTGTGATTCAATGATGGEST: gi|51335098|gb|CO978964.1|CO978964
genomic: CCGAAGATTTGTAATTCCAGATGATGGCAATGAAGAATTTTGCTTGACTGgtatcattaa ... aataatatagGTCGTGAAAACTGCCTCTCAATGTGGACTTTCTGTTGTGATTCAATGATGG
EST: CCGAAGATTTGTAATTCCAGATGATGGCAATGAAGAATTTTGCTTGACTG GTCGTGAAAACTGCCTCTCAATGTGGACTTTCTGTTGTGATTCAATGATGGEST: gi|209724272|gb|BW666614.1|BW666614
genomic: CCGAAGATTTGTAATTCCAGATGATGGCAATGAAGAATTTTGCTTGACTGgtatcattaa ... aataatatagGTCGTGAAAACTGCCTCTCAATGTGGACTTTCTGTTGTGATTCAATGATGG
EST: CCGAAGATTTGTAATTCCAGATGATGGCAATGAAGAATTTTGCTTGACTG GTCGTGAAAACTGCCTCTCAATGTGGACTTTCTGTTGTGATTCAATGATGG
genomic: CCGAAGATTTGTAATTCCAGATGATGGCAATGAAGAATTTTGCTTGACTGgtatcattaa ... aataatatagGTCGTGAAAACTGCCTCTCAATGTGGACTTTCTGTTGTGATTCAATGATGG
tttcacaagttttgctggttttcattgataattttgtccatgtttaataatatagGTCGTGAAAACTGCCTCTCAATGTGGACTTTCTGTTGTGATTCAATGATGGAGACAGATTTGAAGAACGATGGCAGTTTCAATAATCAGTCTGAGAGTAG
gtttaat putative branch site (score: 4)
ataattttgtccatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattctgagaaaaccttatattttttctgtgctacttaaagtagtttcacaagttttgctggttttcattgataattttgtccatgtttaataatatagGTCGTGAAAACTGCCTCTCAATGTGGACTTTCTGTTGTGATTCAATGATGGAGACAGATTTGAAGAACGATGGCAGTTTCAATAATCAGTCTGAGAGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -ttctgag
- - - - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgtt