1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gctttgaaatatacataattgtatacaagcattttgttactcaaacaccttcaagatagtaactgtagaagttttttcatgtttgtaaattgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGATTACCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATATAACCACGGTT
species | Glycine max |
transcript | GLYMA07G30380.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CACAGGCTTCCATG ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGATEST: gi|207805763|gb|GD779584.1|GD779584
genomic: CACAGGCTTCCATGgtaattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
EST: CGCTAACACAGGCTTCCATG ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
genomic: CGCTAACACAGGCTTCCATGgtaattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
caccttcaagatagtaactgtagaagttttttcatgtttgtaaattgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGATTACCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATATAACCACGGTT
tagtaac putative branch site (score: 1)
tttgtaaattgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttgaaatatacataattgtatacaagcattttgttactcaaacaccttcaagatagtaactgtagaagttttttcatgtttgtaaattgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGATTACCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATATAACCACGGTT
- - - - - - - - - - - -tacaagc
- - - - - - - - - - - - - - - - - - - - -caaacac
- - - - - - - - - - - - - - - - - - - - - - - - cttcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaactg