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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcattgggcatgacatttgttgattccacagaataaagatgatttatttattaacattcaattacccttttctgctttctactagcatttcatgttttgttgcttttgttacgcagAGAATCACCGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCTAGGCTTTTATCTTCAACAAATCAACCCAGCTTTTTGGATTCCAAGGGTG

Basic information

species Glycine max
transcript GLYMA07G15170.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G15170.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 12
gtgagttcattgggcatgacatttgttgattccacagaataaagatgatttatttattaacattcaattacccttttctgctttctactagcatttcatgttttgttgcttttgttacgcagAGAATCACCGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCTAGGCTTTTATCTTCAACAAATCAACCCAGCTTTTTGGATTCCAAGGGTG
           |   |  | |  || | ||   | | | || | |   | || | ||    |  | |  |||  |  |||||||        | ||  ||  | |||| | |      |||| |||| |  || ||||||||| | || |||||||| ||||||||||||||||||||| | ||||| || ||||| || |||||||||    |  | |   
------caggagaataaaagaaatgct-atataagatagtaca-acattctagtaatagggaaactaccacctctaactgcttt--------acttgttggatggttggtct------gcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTAGGCTTCTGTCTTCTACCAATCAGCCAAGCTTTTTGAGCCCTGAAGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298172807|gb|HO019791.1|HO019791
EST:     GCTATACAAGTGGACTTGTCAATGGAAGACAAACTTATATACCCTTCTAT                         AGAATCACCGAGAGACAAAACCACGTAGTGATAACTGATAGAATGTGGGCT
genomic: GCTATACAAGTGGACTTGTCAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttacgcagAGAATCACCGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
EST: gi|16349349|gb|BI974944.1|BI974944
EST:     GCTATACAAGTGGACTTGTCAATGGAAGACAAACTTATATACCCTTCTAT                         AGAATCACCGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
genomic: GCTATACAAGTGGACTTGTCAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttacgcagAGAATCACCGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
EST: gi|207796392|gb|GD769742.1|GD769742
EST:     GCTATACAAGTGGACTTGTCAATGGAAGACAAACTTATATACCCTTCTAT                         AGAATCACCGAGAGA
genomic: GCTATACAAGTGGACTTGTCAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttacgcagAGAATCACCGAGAGA
EST: gi|208212784|gb|GE013257.1|GE013257
EST:     GCTATACAAGTGGACTTGTCAATGGAAGACAAACTTATATACCCTTCTAT                         AGAATCACCGAGAGACAAAACCACGTAGTGATAACTGATAGAATGTGGGCT
genomic: GCTATACAAGTGGACTTGTCAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttacgcagAGAATCACCGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
EST: gi|207706215|gb|GD688845.1|GD688845
EST:     GCTATACAAGTGGACTTGTCAATGGAAGACAAACTTATATACCCTTCTAT                         AGAATCACCGAGAGA
genomic: GCTATACAAGTGGACTTGTCAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttacgcagAGAATCACCGAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacccttttctgctttctactagcatttcatgttttgttgcttttgttacgcagAGAATCACCGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCTAGGCTTTTATCTTCAACAAATCAACCCAGCTTTTTGGATTCCAAGGGTG
                                      ttgctttt  CT-rich tract
                                          ttttgtta  TA-rich tract