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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caattgtcgcttggaacattcactctagattatgagtgcatgcagtgccttttgggaagacactgctggaatatgaacacttaatctatacttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGT

Basic information

species Glycine max
transcript GLYMA07G09270.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09270.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv11s0016g03660.t01 (Vitis vinifera), 3'ss of exon 12
caattgtcgcttggaacattcactctagattatgagt-gcatgcagtgccttttgggaagacactgctggaatatg-aacacttaatcta----tacttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGT
      |    || ||   |  ||     | | || |   |   ||     ||||  |  |    | ||||||||  ||    |||| |     | |||  |||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||||||| || || |  |||||||| || ||||| ||||||||||||
------tgatatgaaatgctggctaatagtgaagaatcatacttagacatgtttgaaataatgaggttggaatatataatctctaattttagactcctttgtgcagGTTTGTCTTAACATTTGCTCTGGGGGCTGGCCCAGTTCCAGGTCTTCTCCTACCAGAAATTTTCCCAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018453|gb|CX705195.1|CX705195
EST:     CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT                         GTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCTgtgagtatgc ... cttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
EST: gi|192327720|gb|FK021355.1|FK021355
EST:     CTTGTATCAAACATGGGAGCTCAGTACTTTCCTGTTGGTGGCATGTTCCT                         GTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCTgtgagtatgc ... cttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
EST: gi|19346368|gb|BM891248.1|BM891248
EST:     CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT                         GTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCTgtgagtatgc ... cttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
EST: gi|8284412|gb|BE021971.1|BE021971
EST:     CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT                         GTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCTgtgagtatgc ... cttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
EST: gi|21256350|gb|BQ453238.1|BQ453238
EST:     CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT                         GTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCTgtgagtatgc ... cttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
EST: gi|151399677|gb|EV269548.1|EV269548
EST:     CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT                         GTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCTgtgagtatgc ... cttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
EST: gi|254339875|gb|GR858000.1|GR858000
EST:     CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT                         GTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCTgtgagtatgc ... cttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
EST: gi|17023662|gb|BM094696.1|BM094696
EST:     CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT                         GTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCTgtgagtatgc ... cttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
EST: gi|58017137|gb|CX703879.1|CX703879
EST:     CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT                         GTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCTgtgagtatgc ... cttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
EST: gi|8284214|gb|BE021773.1|BE021773
EST:     CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT                         GTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCTgtgagtatgc ... cttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
EST: gi|192333445|gb|FK023974.1|FK023974
EST:     CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT                         GTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT
genomic: CTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCTgtgagtatgc ... cttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccttttgggaagacactgctggaatatgaacacttaatctatacttcatgcagGTTTGTCTTAACATTTGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGT
                                 acttaat  putative branch site (score: 4)
                                   ttaatctata  TA-rich tract