1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gacagatctaatagaagacaacatagttttggacttcaagcatcaatgtaaatttttgccctgagaatcaacaacctaactctacttgtttttctcctagGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTCGGCCAACATATTGCTTGATACAGATTTTAATCCTCATCTTTCCGACAGT
species | Glycine max |
transcript | GLYMA07G05230.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATATGGAATTCTCATGTGAAGATTGCTTTGGGGATTGCTCATACTGTAGA ATACCTACATAAAATTTGTEST: gi|7685767|gb|AW756415.1|AW756415
genomic: ATATGGAATTCTCGTGTGAAGATTGCTTTGGGGATTGCTCGTGCTTTAGAgtaagttagt ... tttctcctagGTACCTACATGAAGTTTGT
EST: ATATGGAATTCTCGTGTGAAGATTGCTNTGGGGATTGCTCGTGCTTTAGA GTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTCEST: gi|10709647|gb|BF009371.1|BF009371
genomic: ATATGGAATTCTCGTGTGAAGATTGCTTTGGGGATTGCTCGTGCTTTAGAgtaagttagt ... tttctcctagGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC
EST: ATATGGAATTCTCGTGTGAAGATTGCTTTGGGGATTGCTCGTGCTTTAGA GTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTCEST: gi|298175534|gb|HO018245.1|HO018245
genomic: ATATGGAATTCTCGTGTGAAGATTGCTTTGGGGATTGCTCGTGCTTTAGAgtaagttagt ... tttctcctagGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC
EST: GGGGATTGCTCGTGCTTTAGA GTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC
genomic: GGGGATTGCTCGTGCTTTAGAgtaagttagt ... tttctcctagGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC
atgtaaatttttgccctgagaatcaacaacctaactctacttgtttttctcctagGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTCGGCCAACATATTGCTTGATACAGATTTTAATCCTCATCTTTCCGACAGT
acctaac putative branch site (score: 2)
ctctacttgtttttct CT-rich tract
aattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacagatctaatagaagacaacatagttttggacttcaagcatcaatgtaaatttttgccctgagaatcaacaacctaactctacttgtttttctcctagGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTCGGCCAACATATTGCTTGATACAGATTTTAATCCTCATCTTTCCGACAGT
- - - - - - - - - - - - - - - - - ttcaagc
- - - - - - - - - - - - - - - - - - - - - -caatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacttg