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...tttccatagaagactatgtagaattattagtaaggtctaaatgttgtacccagtaacctctgacttgcttctgtttggttatgttgcttgtgttttgcagGTTGGAACTACTTTTGTGGGGCCACAACCTGTCATATATAATCCACAAGCGGCACAAATGCCATCCCAACCATATTTTCATCCAAATGGACCACAG
species | Glycine max |
transcript | GLYMA07G04060.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTACCGTACCCACCGTACCAAATATGCCAGCCATGTCCATGGGTATTGGA GTTGGAACTACTTTTGTGGGGCCACAACCTGTCATATATAATCCACAAGCGEST: gi|21677086|gb|BQ629437.1|BQ629437
genomic: CTACCGTACCCACCGTACCAAATATGCCAGCCATGCCCATGGGTATTGGAgtaagtattt ... tgttttgcagGTTGGAACTACTTTTGTGGGGCCACAACCTGTCATATATAATCCACAAGCG
EST: CTACCGTACCCACCGTACCAAATATGCCAGCCATGCCCATGGGTATTGGA GTTGGAACTACTTTTGTGGGGCCACAACCTGTCATATATAATCCACAAGCGEST: gi|6964211|gb|AW432904.1|AW432904
genomic: CTACCGTACCCACCGTACCAAATATGCCAGCCATGCCCATGGGTATTGGAgtaagtattt ... tgttttgcagGTTGGAACTACTTTTGTGGGGCCACAACCTGTCATATATAATCCACAAGCG
EST: CTACCGTACCCACCGTACCAAATATGCCAGCCATGCCCATGGGTATTGGA GTTGGAACTACTTTTGTGGGGCCACAACCTGTCATATATAATCCACAAGCG
genomic: CTACCGTACCCACCGTACCAAATATGCCAGCCATGCCCATGGGTATTGGAgtaagtattt ... tgttttgcagGTTGGAACTACTTTTGTGGGGCCACAACCTGTCATATATAATCCACAAGCG
gtacccagtaacctctgacttgcttctgtttggttatgttgcttgtgttttgcagGTTGGAACTACTTTTGTGGGGCCACAACCTGTCATATATAATCCACAAGCGGCACAAATGCCATCCCAACCATATTTTCATCCAAATGGACCACAG
ttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttccatagaagactatgtagaattattagtaaggtctaaatgttgtacccagtaacctctgacttgcttctgtttggttatgttgcttgtgttttgcagGTTGGAACTACTTTTGTGGGGCCACAACCTGTCATATATAATCCACAAGCGGCACAAATGCCATCCCAACCATATTTTCATCCAAATGGACCACAG
- - - - - - - tatgtag
- - - - - - - - - - - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct