1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaagtctctgttatcaaatattcgacaggtttacctgtcattacatattatttctgataacgcgaactccttatctatagTTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCATATCAGTTAATGACCTTGTAATCAAG
species | Glycine max |
transcript | GLYMA07G03930.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG TTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCATEST: gi|192309362|gb|FK000570.1|FK000570
genomic: ATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAGgtaagtctct ... ttatctatagTTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCAT
EST: ATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG TTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCATEST: gi|8827585|gb|BE211315.1|BE211315
genomic: ATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAGgtaagtctct ... ttatctatagTTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCAT
EST: ACAAACTCACGAG TTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCAT
genomic: ACAAACTCACGAGgtaagtctct ... ttatctatagTTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCAT
caggtttacctgtcattacatattatttctgataacgcgaactccttatctatagTTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCATATCAGTTAATGACCTTGTAATCAAG
tgataac putative branch site (score: 2)
ctccttatct putative PPT
attacatattatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctctgttatcaaatattcgacaggtttacctgtcattacatattatttctgataacgcgaactccttatctatagTTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCATATCAGTTAATGACCTTGTAATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG