1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tattattttactcactgaaagtctaagattccaaatatagagaatggtacaaggaatatagtaatacctaattcttagaaattttactatttctatgcagGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAGTTACTACAGATGAAGATGGATATTTCATCATTCTAGGAC
species | Glycine max |
transcript | GLYMA07G02180.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAG GTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAEST: gi|254347505|gb|GR853754.1|GR853754
genomic: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAGgtactttcaa ... ttctatgcagGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCA
EST: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAG GTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAEST: gi|162286164|gb|FC456612.1|FC456612
genomic: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAGgtactttcaa ... ttctatgcagGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCA
EST: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAG GTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAEST: gi|151393469|gb|EV263344.1|EV263344
genomic: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAGgtactttcaa ... ttctatgcagGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCA
EST: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAG GTAACGAAGGAATCATTTACTGATGATGGACTCTTTAAGACTGGAGATGCAEST: gi|254347506|gb|GR853755.1|GR853755
genomic: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAGgtactttcaa ... ttctatgcagGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCA
EST: TTGGAAACTTCCTGAG GTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAEST: gi|254321454|gb|GR824771.1|GR824771
genomic: TTGGAAACTTCCTGAGgtactttcaa ... ttctatgcagGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCA
EST: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAG GTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAEST: gi|254348418|gb|GR852097.1|GR852097
genomic: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAGgtactttcaa ... ttctatgcagGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCA
EST: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAG GTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAEST: gi|9205100|gb|BE331324.1|BE331324
genomic: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAGgtactttcaa ... ttctatgcagGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCA
EST: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAG GTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCA
genomic: TTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAGgtactttcaa ... ttctatgcagGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCA
ggtacaaggaatatagtaatacctaattcttagaaattttactatttctatgcagGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAGTTACTACAGATGAAGATGGATATTTCATCATTCTAGGAC
acctaat putative branch site (score: 3)
ctatttct putative PPT
taattcttagaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattattttactcactgaaagtctaagattccaaatatagagaatggtacaaggaatatagtaatacctaattcttagaaattttactatttctatgcagGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAGTTACTACAGATGAAGATGGATATTTCATCATTCTAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - ctcactg
- - - - - - - - - - - - - - - ccaaata