Sequence
atgc intronic sequence ATGC exonic sequence...tctcatgttttctgcttacatgattgtagtctgtagatctgttaatatataatctcaaggcatgcttattaagggatttttggttttggtttacctgaagGAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGG
Basic information
species | Glycine max |
transcript | GLYMA07G01890.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01890.1 (Glycine max), 3'ss of exon 12
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 3'ss of exon 12
tctcatgttttctgcttacatgat--tgtagtctgtagatctgttaatatataatctcaaggcatgcttattaagggatt--tttggttttggtttacctgaagGAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGG
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gtaagtgctcagtgattgtttagtgtttctgcttgttgtttttgaaggatctagt-tggccctcttcttttgtggaaattaacatggtcattggtattctacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCAATTGCTGGAGCTAATAATGGGAGCTCTTTGGTCGTCATGTCGAAAG
upper sequence: GLYMA07G01890.1 (Glycine max), 3'ss of exon 12
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
-----tctcatgttttctgcttacatgattg-tagtctgtagatct-gttaatatataatctcaaggc-atgcttattaagggattt---ttggttttggtttac----ctgaagGAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGG
| | || | ||| | | | | |||| | | | || || | || || | || || | | ||| | | | | ||| | | | |||| ||||||||||| || |||||||| |||| |||||||||||| || ||||| || ||||| ||||| | || || |||||||| |
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
upper sequence: GLYMA07G01890.1 (Glycine max), 3'ss of exon 12
lower sequence: EFJ19085 (Selaginella moellendorffii), 3'ss of exon 9
tctcatgttttctgcttacatgattgtagtctgtagatctgttaat-atataatctcaaggcatgcttattaagggatttttggttttggtttacctgaagGAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGG---------
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--------------------------------gtactacttttgacgaaacaatttttcg--aggcttctca---catttct--ctgctgcctgtc-aaagGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCGGTGCCAACAACGGTAGCTCGCTGGTGGTGATGTCCAAGGGAACGTCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatataatctcaaggcatgcttattaagggatttttggttttggtttacctgaagGAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGG
tttacct CT-rich tract
ttattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctcatgttttctgcttacatgattgtagtctgtagatctgttaatatataatctcaaggcatgcttattaagggatttttggttttggtttacctgaagGAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- tcatgtt
- - - - -ttctgct
- - - - - - - - tacatga
- - - - - - - - - - - - - - gtctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttttg