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gtatgcaaagcagtatattcctttcatgaatatattctgttgacatgattacaagattaatctttcattttaatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAAATGCAAAGAGAGGGCGTGCCATTGTTCTTACAACGCACTCTATGGAAG
species | Glycine max |
transcript | GLYMA06G20360.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAEST: gi|6666498|gb|AW277892.1|AW277892
genomic: TATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: CCTAAGTTAGTCATTCTGGATGAACCG ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAEST: gi|193536829|gb|FK492295.1|FK492295
genomic: CCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: TTGCAATTGCTCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAEST: gi|193417501|gb|FK382927.1|FK382927
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: CTGGATGAACCG ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAEST: gi|193415176|gb|FK380094.1|FK380094
genomic: CTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAEST: gi|193661639|gb|FK602593.1|FK602593
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAEST: gi|193364390|gb|FK328895.1|FK328895
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAEST: gi|193345104|gb|FK309602.1|FK309602
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAEST: gi|120494951|gb|EH223118.1|EH223118
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
tgaatatattctgttgacatgattacaagattaatctttcattttaatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAAATGCAAAGAGAGGGCGTGCCATTGTTCTTACAACGCACTCTATGGAAG
ttttaat putative branch site (score: 3)
tttcct CT-rich tract
attacaagattaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaaagcagtatattcctttcatgaatatattctgttgacatgattacaagattaatctttcattttaatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAAATGCAAAGAGAGGGCGTGCCATTGTTCTTACAACGCACTCTATGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG