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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaatctgacagactgaacaatatatttaaaaatttgatatttttttgtgtgaaagtcaaattatgtgccgttaaatattgacaattgtattgttgtttttatttcttcttaaaagGCGAAAATTGGTACAGATGCTACAATGCAAGATCACATCAAGAAGATGCTTGATCGATCTTATGCAACTAAGGATAGTAGCACTCGTTTCACACCAACTA

Basic information

species Glycine max
transcript GLYMA06G16200.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16200.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv04s0044g01570.t01 (Vitis vinifera), 3'ss of exon 5
-----------gtagaatctgaca--gactgaacaata--tatttaaaaat---ttgatatttttttgtgtgaaagt-caaattatgtgccgtt--aaatattgacaat----tgtattgttgtttttatttcttcttaaaagGCGAAAATTGGTACAGATGCTACAATGCAAGATCACATCAAGAAGATGCTTGATCGATCTTATGCAACTAAGGATAGTAGCACTCGTTTCACACCAACTA
             || |||||       || ||   |   |||| ||   |   || ||  | | |  | |  || | | | | || | |  ||  | | ||||| | |    | |    ||  ||||| || |  ||   ||||    |||||||||||||| |||||||| |||||||| || ||| |||| ||||| | |||||||||||||||    |  ||||||||| ||||||| |
gtaatgaagattaagtatctgtttttagcttaaggttggttattgaattgtctttttatggtctataattttgaattactagtcatttactttttcagacattgaaagtgaactattccttttcttttacttgtctttcttagGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgtgccgttaaatattgacaattgtattgttgtttttatttcttcttaaaagGCGAAAATTGGTACAGATGCTACAATGCAAGATCACATCAAGAAGATGCTTGATCGATCTTATGCAACTAAGGATAGTAGCACTCGTTTCACACCAACTA
               tattgac  putative branch site (score: 2)
                             ttgttgtttttatttc  putative PPT
          ttaaatattgacaatt  TA-rich tract