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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgaaacaccttactgtgcacatgcatgcattttctgtaactgctgcattacttgcttaaattgcaattcaaatcatattatattttactgtttattgttattgaaggaatgaagattttctatccacttctcattttctgttttttatctaatccagGTGAAGGATAGGCATAATGGGAACCTCTTAATGGATGAAGAAGGCCATATTATACATATTGATTTTGGCTTCATGCTTTCTAATTCACCCGGTGGTGTTA

Basic information

species Glycine max
transcript GLYMA06G15820.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15820.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 11
gtgtgaaacaccttactgtgcacatgcatgcattttctgtaactgctgcattacttgcttaaattgcaattcaaatcatattatattttactgtttattgttattgaaggaatgaagattttctatccacttctcattttctgttttttatctaatc--cagGTGAAGGATAGGCATAATGGGAACCTCTTAATGGATGAAGAAGGCCATATTATACATATTGATTTTGGCTTCATGCTTTCTAATTCACCCGGTGGTGTTA
                                                          |||  | |  | | |   |  |||||  | || | | ||    | |||  ||  ||    |||   ||  | ||  | |||  |  |  |  |||  ||   ||||||||||| |||| ||||||||| | || |||||||||||||| ||||| |||||||||||||||||||||||||| || || ||||| |||||||| |
---------------------------------------------------------attagttggtcaatgagcccggattat-ctgtagtatataccagt-ttggtgggttg---gtttaacatatatttgccttttcatcctcctcttctggtcgctagGTGAAGGATCGGCACAATGGGAACTTGTTGATGGATGAAGAAGGTCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaggaatgaagattttctatccacttctcattttctgttttttatctaatccagGTGAAGGATAGGCATAATGGGAACCTCTTAATGGATGAAGAAGGCCATATTATACATATTGATTTTGGCTTCATGCTTTCTAATTCACCCGGTGGTGTTA
                                            atctaat  putative branch site (score: 3)
             ttttctatccacttct  CT-rich tract
                              attttctgttttttat  TA-rich tract