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gtatataatggttttcaatgccctccgattgaagtcctgagtgaaagtatttatacagcatagtttttatctgatgtaatagcattcgtatgcacatgcaacttatgcatccaagatatttttacttgcttaggtgatttttttgtattgctcagGGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGATTGGGATGCACTTCGGGAGATGATATCAAAGAATGGTGTGAGAAACTCAC
species | Glycine max |
transcript | GLYMA06G15350.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTGCAAAGGAAGGTCCCTATGAAACATACAGTGGTAGTCCTATAAGCAAG GGAATTCCTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGATEST: gi|193346590|gb|FK313428.1|FK313428
genomic: CTGCAAAGGAAGGTCCCTATGAAACATACAGTGGTAGTCCTATAAGCAAGgtatataatg ... tattgctcagGGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGAT
EST: CTGCAAAGGAAGGTCCCTATGAAACATACAGTGGTAGTCCTATAAGCAAG GGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGATEST: gi|193363193|gb|FK328313.1|FK328313
genomic: CTGCAAAGGAAGGTCCCTATGAAACATACAGTGGTAGTCCTATAAGCAAGgtatataatg ... tattgctcagGGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGAT
EST: CTGCAAAGGAAGGTCCCTATGAAACATACAGTGGTAGTCCTATAAGCAAG GGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGATEST: gi|193524997|gb|FK480152.1|FK480152
genomic: CTGCAAAGGAAGGTCCCTATGAAACATACAGTGGTAGTCCTATAAGCAAGgtatataatg ... tattgctcagGGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGAT
EST: CTGCAAAGGAAGGTCCCTATGAAACATACAGTGGTAGTCCTATAAGCAAG GGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGAEST: gi|193407860|gb|FK373166.1|FK373166
genomic: CTGCAAAGGAAGGTCCCTATGAAACATACAGTGGTAGTCCTATAAGCAAGgtatataatg ... tattgctcagGGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGA
EST: CTGCAAAGGAAGGTCCCTATGAAACATACAGTGGTAGTCCTATAAGCAAG GGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGAT
genomic: CTGCAAAGGAAGGTCCCTATGAAACATACAGTGGTAGTCCTATAAGCAAGgtatataatg ... tattgctcagGGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGAT
acttatgcatccaagatatttttacttgcttaggtgatttttttgtattgctcagGGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGATTGGGATGCACTTCGGGAGATGATATCAAAGAATGGTGTGAGAAACTCAC
tttttttgt CT-rich tract
aagatatttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatataatggttttcaatgccctccgattgaagtcctgagtgaaagtatttatacagcatagtttttatctgatgtaatagcattcgtatgcacatgcaacttatgcatccaagatatttttacttgcttaggtgatttttttgtattgctcagGGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGATTGGGATGCACTTCGGGAGATGATATCAAAGAATGGTGTGAGAAACTCAC
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