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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccatgatggagtagtaaataagttttagttcgtcctatttgtttgcgtttgttataaaatgtgtaatcaatcttaattcgaagcatggactttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTGATATTCTCCCATTCTGGTGGGCAGTATCGGAATTATATTTGAGTTGGAC

Basic information

species Glycine max
transcript GLYMA06G14060.3
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193435182|gb|FK404092.1|FK404092
EST:     TTCACGATCTGGTATTCTTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: TTCACGATCTGG-A-TC-TCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208118644|gb|GD917893.1|GD917893
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|207847773|gb|GD818308.1|GD818308
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGACTAGTACAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTG-CT-GT-CAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTG
EST: gi|193558704|gb|FK512919.1|FK512919
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGACCTGTGGTTCTCTGGT
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAG-CCTGTGGTTCTCTGGT
EST: gi|208035089|gb|GD835475.1|GD835475
EST:     GCCAAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCC-AAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193704191|gb|FK645271.1|FK645271
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|14011762|gb|BG726684.1|BG726684
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAG
EST: gi|207778588|gb|GD749375.1|GD749375
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193596874|gb|FK553152.1|FK553152
EST:     CGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: CGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193374630|gb|FK341234.1|FK341234
EST:     GATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCCCTGGTG
genomic: GATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208124774|gb|GD924220.1|GD924220
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAG
EST: gi|193559343|gb|FK513792.1|FK513792
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208214545|gb|GE011980.1|GE011980
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208181435|gb|GD974674.1|GD974674
EST:     CTTCTAGGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: CTTCTAGGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193685306|gb|FK625780.1|FK625780
EST:     AAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: AAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193384185|gb|FK352627.1|FK352627
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193702039|gb|FK636013.1|FK636013
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208233746|gb|GE035477.1|GE035477
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|207834765|gb|GD806442.1|GD806442
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193329754|gb|FK294486.1|FK294486
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|31468970|gb|CD410998.1|CD410998
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193693801|gb|FK629029.1|FK629029
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193358496|gb|FK324478.1|FK324478
EST:     GTCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: G-CCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|31311171|gb|CD396374.1|CD396374
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|207777615|gb|GD746666.1|GD746666
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208164056|gb|GD959356.1|GD959356
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208186949|gb|GD987163.1|GD987163
EST:     ATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: ATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193427711|gb|FK398371.1|FK398371
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193576003|gb|FK532148.1|FK532148
EST:     ATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: ATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208249117|gb|GE047162.1|GE047162
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193440226|gb|FK408571.1|FK408571
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208176930|gb|GD976001.1|GD976001
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTT
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTT
EST: gi|193571930|gb|FK529563.1|FK529563
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCNGTTTGGTTCTCTGG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGT--GGTTCTCTGG
EST: gi|10253540|gb|BE821306.1|BE821306
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|23726789|gb|BU761397.1|BU761397
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193622006|gb|FK568108.1|FK568108
EST:     TTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: TTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193467403|gb|FK432516.1|FK432516
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208141033|gb|GD935291.1|GD935291
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|207840155|gb|GD809620.1|GD809620
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|207781179|gb|GD752274.1|GD752274
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|207808553|gb|GD779448.1|GD779448
EST:     CTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: CTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193445833|gb|FK411720.1|FK411720
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208198777|gb|GE000293.1|GE000293
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAGAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193414103|gb|FK376137.1|FK376137
EST:     CTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: CTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193366413|gb|FK331113.1|FK331113
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193470327|gb|FK434644.1|FK434644
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193335620|gb|FK301846.1|FK301846
EST:     TTCACGATCTGGTATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: TTCACGATCTGG-ATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193630136|gb|FK585305.1|FK585305
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193400197|gb|FK367866.1|FK367866
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|193568053|gb|FK524390.1|FK524390
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|208149201|gb|GD945511.1|GD945511
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|207682724|gb|GD666355.1|GD666355
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
EST: gi|15199933|gb|BI424083.1|BI424083
EST:     GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG                         GTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG
genomic: GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGgtatttaaaa ... tttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtttgttataaaatgtgtaatcaatcttaattcgaagcatggactttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTGATATTCTCCCATTCTGGTGGGCAGTATCGGAATTATATTTGAGTTGGAC
                         tcttaat  putative branch site (score: 3)
                                            ctttttttc  putative PPT
      ttataaaatgtgtaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccatgatggagtagtaaataagttttagttcgtcctatttgtttgcgtttgttataaaatgtgtaatcaatcttaattcgaagcatggactttttttcagGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTGATATTCTCCCATTCTGGTGGGCAGTATCGGAATTATATTTGAGTTGGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG