Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtacttgtaatattaccatatgatgatcttagtcctcagaggtttagtctataaatgcttgcatttgttcatcatttacttgttttctataaatctttctttttggtgtttcgctagttctcaaattacttgtgcactttatgacaattcttacagCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAG

Basic information

species Glycine max
transcript GLYMA06G09240.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09240.1 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os01g54020.1 (Oryza sativa), 3'ss of exon 12
gttagtacttgtaatattaccatatgatgatcttagtcctcagaggtttagtctataaatgcttgcatttgttcatcatttacttgttttctataaatctttctttttggtgtttcgctagttctcaaattacttgtgcactttatgacaattcttacagCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAG
                                                            |  || | |   | | |  | ||  | | ||     |      | | | |  |||     || |  ||   |||  | || || |        ||| ||||||||||||||||||| | |||||||||||||| ||||||||| | || || |||||| ||||| |||| || || ||||||
------------------------------------------------------------gtctgtagtctgtgacctctcacacgctctc-----acacacatatgtagccttt----ggtacataagaaactcattcatttgaccttgtacctttcagCTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAG

upper sequence: GLYMA06G09240.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv04s0008g00200.t01 (Vitis vinifera), 3'ss of exon 12
gttagtacttgtaatattaccatatgatgatcttagtcctcagaggtttagtctataaatgcttgcatttgttcatcatttacttgttttctataaatctttctttttggtgtttcgctagttctcaaattacttgtgcactttatgacaattcttacagCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAG
                                               ||  ||||  |||  |  || ||  |   |||       | ||  |||     | |  | |  | ||   ||  ||   |||||   |        | ||  |||||||||||| |||||||||||||  ||||| | |||||||| ||||| ||| || | || || ||||| || ||||| | ||| ||||||
-----------------------------------------------ttcttctaacaattttcccacttcctttccata-----atatttgatatgctctgccatgttattttctactgttttctaaattttct--------tctggaaattcttacagCCTGGAATTTGACAATCCTGAGCGACCTGAATGCAACAACCTTCTTACAATTTATCAGCTAATGTCAGGCAGGACAAAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208261252|gb|GE058706.1|GE058706
EST:     CTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGG                         CTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCAT
genomic: CTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGGgttagtactt ... attcttacagCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCAT
EST: gi|15203981|gb|BI426758.1|BI426758
EST:     CTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGG                         CTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCAT
genomic: CTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGGgttagtactt ... attcttacagCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCAT
EST: gi|15662082|gb|BI699453.1|BI699453
EST:     CTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGG                         CTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCAT
genomic: CTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGGgttagtactt ... attcttacagCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggtgtttcgctagttctcaaattacttgtgcactttatgacaattcttacagCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAG
                                              ttcttac  CT-rich tract
                     aaattactt  TA-rich tract