1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtactgtaggttctgttggataataattttcttgaagtagattttaattcaccacaataaaaacagagcatttttacagGATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGGTTGATGAAACAGATCAGTGAACAAACTGCGGCTCAATATGCCAGCGCTC
species | Glycine max |
transcript | GLYMA06G08660.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAG GATTTTGGGTATTTCEST: gi|193493167|gb|FK460029.1|FK460029
genomic: TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtagg ... atttttacagGATTTTGGGTATTTC
EST: TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAG GATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGGEST: gi|193326388|gb|FK291499.1|FK291499
genomic: TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtagg ... atttttacagGATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGG
EST: TGAACACTTTTT-GTCCAGCCCCAGGATTGATACTGAAATTACAATTGAG GATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATEST: gi|208076846|gb|GD877385.1|GD877385
genomic: TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtagg ... atttttacagGATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAAT
EST: GAACACTTTTTTGTTCCAGCCCCAGGATTGATACTGAAATTACAATTGAG GATTTTGGGTTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGEST: gi|193712978|gb|FK649245.1|FK649245
genomic: GAACACTTTTTTGT-CCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtagg ... atttttacagGATTTTGGGT-ATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGG
EST: TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAG GATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGG
genomic: TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtagg ... atttttacagGATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGG
aattttcttgaagtagattttaattcaccacaataaaaacagagcatttttacagGATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGGTTGATGAAACAGATCAGTGAACAAACTGCGGCTCAATATGCCAGCGCTC
ttttaat putative branch site (score: 3)
cattttt putative PPT
aagtagattttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtaggttctgttggataataattttcttgaagtagattttaattcaccacaataaaaacagagcatttttacagGATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGGTTGATGAAACAGATCAGTGAACAAACTGCGGCTCAATATGCCAGCGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA