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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctatttgatagtgccgtagtggcaatgtggtttgccattctattatgttattccaataggttacataggaaacatgcaaataatctttttgatctccataaagtggaaattttaggtacataaagtcagaaacgaataatattcatcttttgcagATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCCGAGGAACACTTCTCACAGCAAATGTTTCATCCCAG

Basic information

species Glycine max
transcript GLYMA06G07920.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208108629|gb|GD907103.1|GD907103
EST:     AGGGACTCTGAGATCCATGAAAATCGAGATATTGCTG                         ATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCC
genomic: AGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGgtaagctatt ... tcttttgcagATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCC
EST: gi|51335984|gb|CO979850.1|CO979850
EST:     TCAGGTTATAGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTG                         ATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCC
genomic: TCAGGTTATAGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGgtaagctatt ... tcttttgcagATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCC
EST: gi|13481632|gb|BG510975.1|BG510975
EST:     TCAGGTTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTG                         ATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCC
genomic: TCAGGTTATAGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGgtaagctatt ... tcttttgcagATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtggaaattttaggtacataaagtcagaaacgaataatattcatcttttgcagATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCCGAGGAACACTTCTCACAGCAAATGTTTCATCCCAG
                                         ttcatctttt  CT-rich tract
                                  aataatattcatcttt  TA-rich tract