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gtaaatatcgtgtttagtttatagtatttttcgcactaaaatgttagctattcaagaattgaatgtcagaataagcattttaacattttgtcctcagATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAG
species | Glycine max |
transcript | GLYMA06G07380.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAG ATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAEST: gi|16996005|gb|BM085377.1|BM085377
genomic: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAGgtaaatatcg ... ttgtcctcagATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCA
EST: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAG ATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCEST: gi|192321089|gb|FK013549.1|FK013549
genomic: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAGgtaaatatcg ... ttgtcctcagATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACC
EST: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAG ATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCEST: gi|192298259|gb|FG991721.1|FG991721
genomic: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAGgtaaatatcg ... ttgtcctcagATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACC
EST: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAG ATATTCTAGTTACAGAAAGTTT-CCCCTAGGCGTTTCAG-AGCCCACCACCEST: gi|7691963|gb|AW760080.1|AW760080
genomic: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAGgtaaatatcg ... ttgtcctcagATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACC
EST: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAG ATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCEST: gi|15815238|gb|BI787513.1|BI787513
genomic: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAGgtaaatatcg ... ttgtcctcagATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACC
EST: TGACCGGGACAG ATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCEST: gi|208239414|gb|GE041286.1|GE041286
genomic: TGACCGGGACAGgtaaatatcg ... ttgtcctcagATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACC
EST: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAG ATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCEST: gi|10842927|gb|BF066286.1|BF066286
genomic: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAGgtaaatatcg ... ttgtcctcagATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACC
EST: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAG ATATTCTAGTTACAGA
genomic: CGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACCGGGACAGgtaaatatcg ... ttgtcctcagATATTCTAGTTACAGA
gttagctattcaagaattgaatgtcagaataagcattttaacattttgtcctcagATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAG
ttttaac putative branch site (score: 2)
ttttgtcctc CT-rich tract
attttaacattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatcgtgtttagtttatagtatttttcgcactaaaatgttagctattcaagaattgaatgtcagaataagcattttaacattttgtcctcagATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC