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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgaaacttctctgcatttttattaatactccatccatcaacttttttcgtaagtatttaatgatcctgtcaccatgcagATGGTGGCTGGAAGGTTTGTGAATGCTTACTCTTCCAATGATTGGACGTTAGGCATAACTTTCCGTGCCAG

Basic information

species Glycine max
transcript GLYMA06G02950.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G02950.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM5G886799_T01 (Zea mays), 3'ss of exon 12
------------------------------------------------------------------gtatttgaaac-ttctctgcat-ttttattaatactccatc-catcaacttttttcgtaagtatttaatgatcctgtcaccatgcagATGGTGGCTGGAAGGTTTGTGAATGCTTACTCTTCCAATGATTGGACGTTAGGCATAACTTTCCGTGCCAG
                                                                   ||  ||     | || ||     |   | || |  |||   |  |  |  || | | |  |  | | ||    || | |  |||||||||| || |||||||||||||||| ||||||  |||| || ||||   | ||| | |||||||| || ||
gtatgataaatcccagcttcttttccggaccagctctgacagacttccttctcgtgtaaattctgcatacctgtgctgtgctgtgtgcgctccctgaagaaaccacagctcctgccgttcttgcatctcctcattggcattgcctcgctgcagATGGTCGCCGGAAGGTTTGTGAATGTTTACTCCACCAACGACTGGATCCTCGGCGTCACTTTCCGCGCTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactccatccatcaacttttttcgtaagtatttaatgatcctgtcaccatgcagATGGTGGCTGGAAGGTTTGTGAATGCTTACTCTTCCAATGATTGGACGTTAGGCATAACTTTCCGTGCCAG
                                       tcctgtc  CT-rich tract
                         taagtatttaatgat  TA-rich tract