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...gtcattcaacctatttatctttgcttgcatgctcttcaattaacatatgaactgcttcaatttagtaacaagctaattgtaattttcctgattgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG
species | Glycine max |
transcript | GLYMA05G37850.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGG GTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAEST: gi|12691343|gb|BG157679.1|BG157679
genomic: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGGgtgagtggcc ... attgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
EST: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGG GTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAEST: gi|13480024|gb|BG509367.1|BG509367
genomic: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGGgtgagtggcc ... attgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
EST: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGG GTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAEST: gi|9900602|gb|BE609570.1|BE609570
genomic: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGGgtgagtggcc ... attgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
EST: TGCTGATGGAGGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGG GTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAEST: gi|192303006|gb|FG997022.1|FG997022
genomic: TGCTGATGGA-GGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGGgtgagtggcc ... attgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
EST: TTGGAGAAGATTGTGTGCTTTACCAGCATTTT-- G--GGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAEST: gi|213588137|gb|DB979215.1|DB979215
genomic: TTGGAGAAGATTGTGTGCTTTACCAGCATTTTGGgtgagtggcc ... attgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
EST: GTGTGCTTTACCAGCATTTTGG GTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAEST: gi|120494105|gb|EH222272.1|EH222272
genomic: GTGTGCTTTACCAGCATTTTGGgtgagtggcc ... attgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
EST: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGG GTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAEST: gi|19453403|gb|BM954813.1|BM954813
genomic: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGGgtgagtggcc ... attgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
EST: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGG GTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAEST: gi|192299708|gb|FG990032.1|FG990032
genomic: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGGgtgagtggcc ... attgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
EST: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGG GTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACGEST: gi|192303005|gb|FG997021.1|FG997021
genomic: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGGgtgagtggcc ... attgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
EST: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTT-- G--GGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAEST: gi|209707542|gb|BW665001.1|BW665001
genomic: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGGgtgagtggcc ... attgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
EST: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGG GTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
genomic: GTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGGgtgagtggcc ... attgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACA
tatgaactgcttcaatttagtaacaagctaattgtaattttcctgattgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG
taattgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattcaacctatttatctttgcttgcatgctcttcaattaacatatgaactgcttcaatttagtaacaagctaattgtaattttcctgattgtgtcagGTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA