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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatgcagtgcctcactactcttatttaacatttcttttcaaaatatacttaataaaggtttttatgtatttatttattgctatagGTACTTCGAACGGGACAGATAGACTTGTCTCAATTTGGAATTGATCCAAGTAAAT

Basic information

species Glycine max
transcript GLYMA05G36490.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36490.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv11s0065g00450.t01 (Vitis vinifera), 3'ss of exon 12
gtgag-aatgcagtgcctcact-------actcttatttaacatttcttttcaaaatatacttaat---aaaggtttttatgtattta-tttattgcta--tagGTACTTCGAACGGGACAGATAGACTTGTCTCAATTTGGAATTGATCCAAGTAAAT
|||||  ||    | || | ||       | | |  |  |  |    |  | | | | |  |  ||   |   | |||  ||| |    ||| ||  ||  |||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||
gtgagtgatttgatccccccctctctcccattttcttccattaccgttaattagattgttttggatcttatgagatttagtgtttcccctttgttaataaatagGTACTTCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttttcaaaatatacttaataaaggtttttatgtatttatttattgctatagGTACTTCGAACGGGACAGATAGACTTGTCTCAATTTGGAATTGATCCAAGTAAAT
                acttaat  putative branch site (score: 4)
         aaaatatacttaataa  TA-rich tract