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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcgcatagaaatgatttatttgttaaaaatgtagagaatttaaacttttcaattcaaaattagttttcaagtttatgattaggtgaatgaatttgtaattttgagtagaaaattatagaattaggagcattaatgttggttgctttgttatgcagAGGATCACTGAGGGACAGAACAAAGTGATAATTACTGATAGAATGTGGGCTAGGCTTCTGTCTTCAACAAATCAGCCCAGCTTTACGATTGCTAAGACT

Basic information

species Glycine max
transcript GLYMA05G36050.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36050.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 12
gtgagttcgcatagaaatgatttatttgttaaaaatgtagagaatttaaacttttcaattcaaaattagttttcaagtttatgattaggtga-atgaatttgtaattttgagtagaaaattatagaattaggagcattaat-gttggttgctttgttatgcagAGGATCACTGAGGGACAGAACAAAGTGATAATTACTGATAGAATGTGGGCTAGGCTTCTGTCTTCAACAAATCAGCCCAGCTTTACGATTGCT-AAGACT
                                                            ||  |  |      || |     || || |   |  |  || || |  |  |  |||| |   |    ||   || ||| | ||||| || || ||  ||||| | || | |||  |||||||||||||  | || || ||||||||||||||||||||||||||||| || |||||||| ||||||  ||   || ||||| 
------------------------------------------------------------caggagaataaaagaaatgctatataagatagtacaacattctagtaatagg--gaaactaccacctctaactgctttacttgttggatggttggtc-tgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTAGGCTTCTGTCTTCTACCAATCAGCCAAGCTTTTTGAGCCCTGAAGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagtagaaaattatagaattaggagcattaatgttggttgctttgttatgcagAGGATCACTGAGGGACAGAACAAAGTGATAATTACTGATAGAATGTGGGCTAGGCTTCTGTCTTCAACAAATCAGCCCAGCTTTACGATTGCTAAGACT
                           cattaat  putative branch site (score: 3)
                                       ttgcttt  putative PPT
     tagaaaattatagaat  TA-rich tract