1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgtgtttcattctacttcaatttattttgccttttgagagaatattgtatgtctttattatcatgttgactttttcctcctttttagTATGAGGATGATGAAGGTGATAAAATTGTTCTTGCAACTGATAGTGATCTTGTTTCTGCCGTCAGCTATGCTACATCTGCAGGAATGAAG
species | Glycine max |
transcript | GLYMA05G32930.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAATCATGCAGAGACTTGATGTGAATGATGTGGAACGCCCTATGATTTTG TATGAGGATGATGAAGGTGATAAAATTGTTCTTGCAACTGATAGTGATCTTEST: gi|192306261|gb|FG996861.1|FG996861
genomic: CAATCATGCAGAGACTTGATGTGAATGATGTGGAACGCCCTATGATTTTGgtgtgtttca ... tcctttttagTATGAGGATGATGAAGGTGATAAAATTGTTCTTGCAACTGATAGTGATCTT
EST: CAATCATGCAGAGACTTGATGTGAATGATGTGGAACGCCCTATGATTTTG TATGAGGATGATGAAGGTGATAAAATTGTTCTTGCAACTGATAGTGATCTTEST: gi|192312689|gb|FK004377.1|FK004377
genomic: CAATCATGCAGAGACTTGATGTGAATGATGTGGAACGCCCTATGATTTTGgtgtgtttca ... tcctttttagTATGAGGATGATGAAGGTGATAAAATTGTTCTTGCAACTGATAGTGATCTT
EST: CAATCATGCAGAGACTTGATGTGAATGATGTGGAACGCCCTATGATTTTG TATGAGGATGATGAAGGTGATAAAATTGTTCTTGCAACTGATAGTGATCTT
genomic: CAATCATGCAGAGACTTGATGTGAATGATGTGGAACGCCCTATGATTTTGgtgtgtttca ... tcctttttagTATGAGGATGATGAAGGTGATAAAATTGTTCTTGCAACTGATAGTGATCTT
tttgagagaatattgtatgtctttattatcatgttgactttttcctcctttttagTATGAGGATGATGAAGGTGATAAAATTGTTCTTGCAACTGATAGTGATCTTGTTTCTGCCGTCAGCTATGCTACATCTGCAGGAATGAAG
tgttgac putative branch site (score: 3)
tgttgactttttcctc CT-rich tract
aatattgtatgtcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtttcattctacttcaatttattttgccttttgagagaatattgtatgtctttattatcatgttgactttttcctcctttttagTATGAGGATGATGAAGGTGATAAAATTGTTCTTGCAACTGATAGTGATCTTGTTTCTGCCGTCAGCTATGCTACATCTGCAGGAATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG