1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatgttgcagtccatatttcatgtacaagagtagcgtgtggcccttaatctttaggaaggagtcctgtgtgtgattcgttaaaacaacttcgttatgtgcatattattatttttgcccctattgagtatcatatgccttggccaatttgtattttattgattctgttggaagctgatctatctggtcttctacagATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTTGTGCAACTGTAGAGTATGTTGAAG
species | Glycine max |
transcript | GLYMA05G30770.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGATTCAAATCAG ATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTEST: gi|58024532|gb|CX711273.1|CX711273
genomic: GGATTCAAATCAGgtatgttgca ... tcttctacagATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTT
EST: GAGAGTTCAGGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAG ATCTGGGAACTGAAATCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTEST: gi|58024320|gb|CX711061.1|CX711061
genomic: GAGAGTTCAGGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAGgtatgttgca ... tcttctacagATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTT
EST: GAGAGTTCAGGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAG ATCTGGGAACTGAAATCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTEST: gi|58017989|gb|CX704731.1|CX704731
genomic: GAGAGTTCAGGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAGgtatgttgca ... tcttctacagATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTT
EST: GAGAGTTCAGGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAG ATCTGGGAACTGAAATCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTEST: gi|214009834|gb|DB990343.1|DB990343
genomic: GAGAGTTCAGGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAGgtatgttgca ... tcttctacagATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTT
EST: ATGCAGATGGGATTCAAATCAG AAATGGGAACTG-ACTTTGGATGGGACCATGTTATTTAGTTACTCCGGTCTEST: gi|151401219|gb|EV271033.1|EV271033
genomic: ATGCAGATGGGATTCAAATCAGgtatgttgca ... tcttctacagATCTGGGAACTGAAC-TCCAATGGGACCATGGTAAATAGTTACTCCGGTCT
EST: GAGAGTTCAGGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAG ATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTT
genomic: GAGAGTTCAGGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAGgtatgttgca ... tcttctacagATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTT
gccaatttgtattttattgattctgttggaagctgatctatctggtcttctacagATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTTGTGCAACTGTAGAGTATGTTGAAG
tcttctac CT-rich tract
tttgtattttattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgcagtccatatttcatgtacaagagtagcgtgtggcccttaatctttaggaaggagtcctgtgtgtgattcgttaaaacaacttcgttatgtgcatattattatttttgcccctattgagtatcatatgccttggccaatttgtattttattgattctgttggaagctgatctatctggtcttctacagATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTTGTGCAACTGTAGAGTATGTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG