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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcttcgaaaatttactattatgggtttttgctattcaattttttgatgtcatcccagcaaatttgttcattttcctaatttcttatttctttggaatgttagGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTC

Basic information

species Glycine max
transcript GLYMA05G30430.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30430.2 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G037683_T01 (Zea mays), 3'ss of exon 11
gtgtgtcttcgaaaatttactattatgggtttttgctattcaattttttgatgtcatcccagcaaatttgttcattttcctaatttcttatttctttggaatgttagGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTC
              | | |||  |      | |     ||  | ||  |  ||| ||  |    | |   | ||| ||    | | | | |   |||  | |   ||||||| ||||| ||||| |||||||| ||  | || || || |||||||||||||||||||| || || || || ||||| ||||  ||||||||  | |
------------gtactgacttct-cacactctacaagtttgacttgatattgt-ataacctttagtaaatccatgtttaccaatacatgtcctttt--atttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGATCACATTGTTGTCTGCAATAAGACTTCATCAATATTCATCATGACTTTAC

upper sequence: GLYMA05G30430.2 (Glycine max), 3'ss of exon 12
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 3'ss of exon 12
gtgtgtcttcgaaaatttactattatgggtttttgctattcaattttttgatgtcatcccagcaaatttgttcattttcctaatttcttatttctttggaatgttagGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTC
  || ||||     ||  |   |||||    | |  || |   |||| |||| |  |    ||||| |  ||  ||  |   |  ||| | ||  ||| ||| | |||||  |||||| || ||||| ||| ||||| | |||||||| || || || ||||||||||| || ||||| || ||||| ||||| || |||||||| |
--gtatcttttcttatacagatttatgtacatcttgtaatactttttctgatcttctgt-ggcaaactctttggttacc---aagtctgaatt--ttgaaatat-agGGAACTGATGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208117434|gb|GD919132.1|GD919132
EST:     TAAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCTCCTTTAAGG                         GGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGAT
genomic: TAAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCTCCTTTAAGGgtgtgtcttc ... ggaatgttagGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGAT
EST: gi|208065883|gb|GD864380.1|GD864380
EST:     TAAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCTCCTTTAAGG                         GGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAG
genomic: TAAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCTCCTTTAAGGgtgtgtcttc ... ggaatgttagGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAG
EST: gi|193668798|gb|FK609032.1|FK609032
EST:     TAAAGACTACAGACTGCATACAAAC-TTTAAGCCACCTCCTCCTTTAAGG                         GGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGAT
genomic: TAAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCTCCTTTAAGGgtgtgtcttc ... ggaatgttagGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcatcccagcaaatttgttcattttcctaatttcttatttctttggaatgttagGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTC
                         tcctaat  putative branch site (score: 2)
                               tttcttatttctttg  CT-rich tract
                            taatttcttatttctt  TA-rich tract