1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...taagattactctaggtgatgctcgtggtgaatgttgcctgacttgtcaatggcccttggtatttttttgctgagattttcccatttttgtttacttgcagGAACCTGACACTGAGATCTGTGCAAGCATGTTGGATTCATTAAATGAATGCTTACAG
species | Glycine max |
transcript | GLYMA05G28950.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATTTTTGACTGACAGTATCATCCCAGCTCTGGTGGAAGCATTGCACAAG GAACCTGACACTGAGATCTGTGCAAGCATGTTGGATTCATTAAATGAATGCEST: gi|21887848|gb|BQ741061.1|BQ741061
genomic: AATTTTTGACTGACAGTATCATCCCAGCTCTGGTGGAAGCATTGCACAAGgtaaattgat ... ttacttgcagGAACCTGACACTGAGATCTGTGCAAGCATGTTGGATTCATTAAATGAATGC
EST: AATTTTTGACTGACAGTATCATCCCAGCTCTGGTGGAAGCATTGCACAAG GAACCTGACACTGAGATCTGTGCAAGCATGTTGGATTCATTAAATGAATGCEST: gi|17153820|gb|BM143753.1|BM143753
genomic: AATTTTTGACTGACAGTATCATCCCAGCTCTGGTGGAAGCATTGCACAAGgtaaattgat ... ttacttgcagGAACCTGACACTGAGATCTGTGCAAGCATGTTGGATTCATTAAATGAATGC
EST: AATTTTTGACTGACAGTATCATCCCAGCTCTGGTGGAAGCATTGCACAAG GAACCTGACACTGAGATCTGTGCAAGCATGTTGGATTCATTAAATGAATGCEST: gi|208132877|gb|GD927828.1|GD927828
genomic: AATTTTTGACTGACAGTATCATCCCAGCTCTGGTGGAAGCATTGCACAAGgtaaattgat ... ttacttgcagGAACCTGACACTGAGATCTGTGCAAGCATGTTGGATTCATTAAATGAATGC
EST: AATTTTTGACTGACAGTATCATCCCAGCTCTGGTGGAAGCATTGCACAAG GAACCTGACACTGAGATCTGTGCAAGCATGTTGGATTCATTAAATGAATGC
genomic: AATTTTTGACTGACAGTATCATCCCAGCTCTGGTGGAAGCATTGCACAAGgtaaattgat ... ttacttgcagGAACCTGACACTGAGATCTGTGCAAGCATGTTGGATTCATTAAATGAATGC
tcaatggcccttggtatttttttgctgagattttcccatttttgtttacttgcagGAACCTGACACTGAGATCTGTGCAAGCATGTTGGATTCATTAAATGAATGCTTACAG
ttttcccatttttgtt CT-rich tract
atttttgtttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagattactctaggtgatgctcgtggtgaatgttgcctgacttgtcaatggcccttggtatttttttgctgagattttcccatttttgtttacttgcagGAACCTGACACTGAGATCTGTGCAAGCATGTTGGATTCATTAAATGAATGCTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - -ggtgatg
- - - - - - - - - - - -gtggtga
- - - - - - - - - - - - - - - -tgttgcc
- - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - -gcccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctga