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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaagggtgttgataccactttggacttatttgtatcatataatctgcaatcttttagctgttttatgaatattgatctgtggattgattttatatgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACA

Basic information

species Glycine max
transcript GLYMA05G26240.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26240.2 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 3'ss of exon 12
------aaaagggtgttgataccactttggacttatttgtatcatataatctgcaatcttttagctgttttatgaatattgatctgtggattgattttatatgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACA
        |||   ||     |||  ||  |   |  || |   |  |   | || ||| ||   | |||   | | ||  |  | |  |    |||| | | ||||||||||||||| |||||||| || |||||||| ||||| ||  ||||||| || || |||||||||| |||||| || || ||    ||  | ||  | 
ctcttcctaagaaagtgagagccatgtttaa---aactgcaagctccatcattcattctattg--tatttgtagcacatgaaatt-tacaaaacttttgtgtccagTTATCATCTTGCTGAGAAGAAGATCCCTTCCATCCATGGGTACGCAATGGGCTTGAAGCTTGAACAGTATATATTCGACGCGTTCAGTTACTCCCCATCC

upper sequence: GLYMA05G26240.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 3'ss of exon 12
aaaagggtgttgataccactttggactta------tttgtatc-atataatctgcaatcttttagctgttttatgaatattgatctgtggattg-attttatatgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACA
          | || | | ||||   ||       |||  ||| ||| |   | ||||   | | |    || |||||||| ||||      || ||| |   || ||||| ||||| ||||||||||||||  |||| |  || ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||| ||
--------tcttatgcaattttgtggttgcatgatttttcatctataaatgtttcaattactcaaccacattttgaatattaatctacactctggattgtgagtgtagTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19938086|gb|BQ081553.1|BQ081553
EST:     ACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatatgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaatcttttagctgttttatgaatattgatctgtggattgattttatatgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACA
                ttttatgaatattgat  TA-rich tract