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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgttatccatttattttattccttttgctgttctttatgttttctttgtttccttcctttaagcttgaaagatagcaatcctagactaatatatggaatgcatttatatttttcttttcagctccttctattgattcttttgcctattatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGC

Basic information

species Glycine max
transcript GLYMA05G25780.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193704399|gb|FK644793.1|FK644793
EST:     TACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC                         TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
genomic: TACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: gi|24136282|gb|BU926792.1|BU926792
EST:     AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC                         TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: gi|207740974|gb|GD714352.1|GD714352
EST:     AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC                         TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: gi|208104675|gb|GD905044.1|GD905044
EST:     AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC                         TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGTTTCGGAATTTCTCTTT
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: gi|193464012|gb|FK427880.1|FK427880
EST:     AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC                         TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: gi|208267765|gb|GE071182.1|GE071182
EST:     AGGTCTTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC                         TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
genomic: AGGTC-TCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: gi|192300083|gb|FG991873.1|FG991873
EST:     AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC                         TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: gi|208336761|gb|GE135151.1|GE135151
EST:     AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC                         TGTATACATTTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTT
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACA-TTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTT
EST: gi|192332805|gb|FK026806.1|FK026806
EST:     AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC                         TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatatttttcttttcagctccttctattgattcttttgcctattatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGC
                          tattgat  putative branch site (score: 3)
                                ttcttttgcctattat  CT-rich tract
                                          tattatttttca  TA-rich tract