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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttgtttattattagtgatattttctgttatattttggaaaatacatccccccttttttattattttaccagaggatttgggttttgttgaaggattcttaattcttaatgctgatctacatgttttttatgtaatgcttacaagtgttttattttgtggtatagGAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAGGGATCGCTTCAAAAGCGTCAACCGGGATCGCAGTCGTAGTCCTAACAGGGCCGCATTA

Basic information

species Glycine max
transcript GLYMA05G08750.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193348286|gb|FK309494.1|FK309494
EST:     TCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAGTCCCAGAG                         GAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAGGGATACGCT
genomic: TCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAGTCCCAGAGgttagttttg ... tgtggtatagGAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAGGGAT-CGCT
EST: gi|254317963|gb|GR832131.1|GR832131
EST:     TGCTTCTGGCAGAGGTGGAGGCCCGTGGGTTTGACTATGAGTCCCCAGAG                         GAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAAGGGATCGC
genomic: TGCTTCTGGCAGAGGTGGAGGCC-GTGGGTTTGACTATGAGTCCC-AGAGgttagttttg ... tgtggtatagGAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGA-GGGATCGC
EST: gi|14259604|gb|BG882512.1|BG882512
EST:     GGCCGTGGGTTTGACTATGAGTCCCAGAG                         GAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAGGGATCGCTT
genomic: GGCCGTGGGTTTGACTATGAGTCCCAGAGgttagttttg ... tgtggtatagGAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAGGGATCGCTT
EST: gi|193344343|gb|FK312873.1|FK312873
EST:     TCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAGTCCCAGAG                         GAATGATAGGGATCGGAGCCCAGACAAAGGGATCAAGTTGGAGGGATCGCT
genomic: TCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAGTCCCAGAGgttagttttg ... tgtggtatagGAATGATAGGGATCGGAGCCCAGACAA-GGGATCAAGTTGGAGGGATCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgatctacatgttttttatgtaatgcttacaagtgttttattttgtggtatagGAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAGGGATCGCTTCAAAAGCGTCAACCGGGATCGCAGTCGTAGTCCTAACAGGGCCGCATTA
                         tgcttac  putative branch site (score: 2)
                                     ttttatttt  putative PPT
          atgttttttatgtaat  TA-rich tract